View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_22 (Length: 347)
Name: NF15317_low_22
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 43222120 - 43221787
Alignment:
| Q |
1 |
gcactagcctttttgatgaatggtgaaccagaaatagttaagaacttcttactgaagacgctgcgtcttcaagggtgggaaaaaagagtagatcaattta |
100 |
Q |
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| T |
43222120 |
gcactagcctttttgatgaatggtgaaccggaaatagttaagaacttcttactgaagacgctgcgtcttcaagggtgggaaaaaagagtagatcaattta |
43222021 |
T |
|
| Q |
101 |
agcttggtgaaggtgttatgccagctagtttcaaagtccttcatgatgctgttaggaaaacagatactcttattgcagattttggtgaaagtgcaattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222020 |
agcttggtgaaggtgttatgccagctagtttcaaagtccttcatgatgctgttaggaaaacagatactcttattgcagattttggtgaaagtgcaattgg |
43221921 |
T |
|
| Q |
201 |
aagagttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacaggggatttaactctgtctgaatctgatgattgt |
300 |
Q |
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| T |
43221920 |
aagagttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacaggggatttaactctgtctgaatctgatgattgt |
43221821 |
T |
|
| Q |
301 |
caaaaaggaatgaaacttatattgaccctatgct |
334 |
Q |
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| T |
43221820 |
caaaaaggaatgaaacttatattgactctatgct |
43221787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 43231535 - 43231213
Alignment:
| Q |
4 |
ctagcctttttgatgaatggtgaaccagaaatagttaagaacttcttactgaagacgctgcgtcttcaagggtgggaaaaaagagtagatcaatttaagc |
103 |
Q |
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| T |
43231535 |
ctagcctttttgatgaatggtgaaccggaaatagtaaaaaacttcttgttaaagacactacatcttcaggggtgggagaaaagagtagataggtttaaac |
43231436 |
T |
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| Q |
104 |
ttggtgaaggtgttatgccagctagtttcaaagtccttcatgatgctgttaggaaaacagatactcttattgcagattttggtgaaagtgcaattggaag |
203 |
Q |
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|||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
43231435 |
ttggggaaggtgtgatgccagctagtttcaaagtcctgcatgatgccgttaggaaaacagatactcttattgcagattttggcgaaagtgcaatcggaag |
43231336 |
T |
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| Q |
204 |
agttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacaggggatttaactctgtctgaatctgatgattgtcaa |
303 |
Q |
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| T |
43231335 |
agttgctcctgttgactctggattctggtggatcattttgcttcgtgcttacacaaaatctacaggggacttaactctgtctgaatctgatagttgtcaa |
43231236 |
T |
|
| Q |
304 |
aaaggaatgaaacttatattgac |
326 |
Q |
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| T |
43231235 |
aaaggaatgaagcttatattgac |
43231213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 269
Target Start/End: Complemental strand, 55112614 - 55112520
Alignment:
| Q |
175 |
gcagattttggtgaaagtgcaattggaagagttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacagg |
269 |
Q |
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| T |
55112614 |
gcagattttggtgaaagtgcaataggcagggttgctcctgttgattctggattttggtggatcatattgcttcgtgcatacacaaaatctacagg |
55112520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 7788620 - 7788433
Alignment:
| Q |
4 |
ctagcctttttgatgaatggtgaaccagaaatagttaag-aacttcttactgaagacgctgcgtcttcaagggtgggaaaaaagagtagatcaatttaag |
102 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| ||| ||||| || ||||||| || | |||||| ||||||| ||||||||||||| ||||||| |
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| T |
7788620 |
ctagcctttttgatgaatggtgaaccgaaaatagtcaagaaacttattcttgaagacactacatcttcatgggtggg-aaaaagagtagatttatttaag |
7788522 |
T |
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| Q |
103 |
cttggtgaaggtgttatgccagctagtttcaaagtccttcatgatgctgttaggaaaacagatactcttattgcagattttggtgaaag |
191 |
Q |
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|||| |||| ||| |||| |||| ||||| |||||||||| |||| |||||||| ||| |||||||||| ||||||||| ||||| |
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| T |
7788521 |
cttgtggaagatgtgatgcaagcttgtttcgaagtccttcacgatgacactaggaaaatagacactcttattgaagattttggcgaaag |
7788433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 28863251 - 28863339
Alignment:
| Q |
181 |
tttggtgaaagtgcaattggaagagttgctcctgttgactctggattttggtggatcattttgcttcgtgcttacacaaaatctacagg |
269 |
Q |
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||||||| ||||||||| || || |||||||||||||| ||||||||||||||||| || || ||||||||||||||||| |||||||| |
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| T |
28863251 |
tttggtggaagtgcaataggcagggttgctcctgttgattctggattttggtggattatattacttcgtgcttacacaaagtctacagg |
28863339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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