View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_24 (Length: 339)
Name: NF15317_low_24
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 16628205 - 16627895
Alignment:
| Q |
12 |
acagatgaggaagtttctgtttgatagatgatggattgattatatttgcaatatataattgttgaccataatatgtgtttcataatttgaattacatgca |
111 |
Q |
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| T |
16628205 |
acagatgaggaagtttctgtttgatagatgatggattgattatatttgcaatatataattgttgaccataatatgtgtttcataatttgaattacatgca |
16628106 |
T |
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| Q |
112 |
gtgaggactttagagctttgtttgagagagcaaaaggaaaactgagagttaatctggaaagcatgaagcaaccatggttgattaaggatgtagctagagc |
211 |
Q |
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| T |
16628105 |
gtgaggactttagagatttgtttgagagagcaaaaggaaagctgagagttaatctggaaagcatgaagcaaccatggttgattaaggatgtagctagagc |
16628006 |
T |
|
| Q |
212 |
atgggaacgttgtgctagagaagcaatccttgaatatgcacatgttaatggtggtggaacatttgcctcaatgtatggtggttgggaattctgttgatgc |
311 |
Q |
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| T |
16628005 |
atgggaaggttgtgctagagaagcaatccttgaatatgcacatgttaatggtggtggaacatttacctcaatgtatggtggttgggaattctgttgattc |
16627906 |
T |
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| Q |
312 |
attcccatttg |
322 |
Q |
| |
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||| ||||||| |
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| T |
16627905 |
attaccatttg |
16627895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 16637086 - 16636776
Alignment:
| Q |
12 |
acagatgaggaagtttctgtttgatagatgatggattgattatatttgcaatatataattgttgaccataatatgtgtttcataatttgaattacatgca |
111 |
Q |
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| T |
16637086 |
acagatgaggaagtttctgtttgatagatgatggattgattatatttgcaatatataattgttgaccataatatgtgtttcataatttgaattacatgca |
16636987 |
T |
|
| Q |
112 |
gtgaggactttagagctttgtttgagagagcaaaaggaaaactgagagttaatctggaaagcatgaagcaaccatggttgattaaggatgtagctagagc |
211 |
Q |
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| T |
16636986 |
gtgaggactttagagatttgtttgagagagcaaaaggaaagctgagagttaatctggaaagcatgaagcaaccatggttgattaaggatgtagctagagc |
16636887 |
T |
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| Q |
212 |
atgggaacgttgtgctagagaagcaatccttgaatatgcacatgttaatggtggtggaacatttgcctcaatgtatggtggttgggaattctgttgatgc |
311 |
Q |
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| T |
16636886 |
atgggaaggttgtgctagagaagcaatccttgaatatgcacatgttaatggtggtggaacatttacctcaatgtatggtggttgggaattctgttgattc |
16636787 |
T |
|
| Q |
312 |
attcccatttg |
322 |
Q |
| |
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| T |
16636786 |
attaccatttg |
16636776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 53 - 298
Target Start/End: Complemental strand, 16616065 - 16615821
Alignment:
| Q |
53 |
atatttgcaatatataattgttgaccataatatgtgtttcataatttgaattacatgcagtgaggactttagagctttgtttgagagagcaaaaggaaaa |
152 |
Q |
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||||||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||||| ||| | |||||| | ||||||| |||||||| ||| |
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| T |
16616065 |
atatttgcaatgtatagctgttgaccataatttgtgtttcataatttga-ttacatgcagtgatgacctgagagctctttttgagaaagcaaaagcaaag |
16615967 |
T |
|
| Q |
153 |
ctgagagttaatctggaaagcatgaagcaaccatggttgattaaggatgtagctagagcatgggaacgttgtgctagagaagcaatccttgaatatgcac |
252 |
Q |
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|||||| |||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16615966 |
ctgagacttaaactgcaaagcacgaagcaaccatggttgattaaggatgtagctagagcatgggaaggttgtgctagagaagcaatccttgaatatgcac |
16615867 |
T |
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| Q |
253 |
atgttaatggtggtggaacatttgcctcaatgtatggtggttggga |
298 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16615866 |
atgctaatggtggtggaacatttacctcaatgtatggtggttggga |
16615821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 38877015 - 38876797
Alignment:
| Q |
32 |
ttgatagatgatggattg-attatatttgcaatatataattgttgaccataatatgtgtttcataatttgaattacatgcagtgaggactttagagcttt |
130 |
Q |
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||||||||||||||||| ||| |||||||||||||| ||||||||| ||| ||||||| ||||||||||| ||||||||||||||| | |||||| | |
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| T |
38877015 |
ttgatagatgatggattatatttgatttgcaatatatagttgttgaccttaacttgtgtttaataatttgaatgacatgcagtgaggacctgagagctct |
38876916 |
T |
|
| Q |
131 |
gtttgagagagcaaaaggaaaactgagagttaatctggaaagcatgaagcaaccatggttgattaaggatgtagctagagcatgggaacgttgtgctaga |
230 |
Q |
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| T |
38876915 |
atttgaaagagcaaaagcaaagctgagatttaatcttgaaagcatgaacgaaacatggttgattaaggatataacaagagcatgggaaagttgtgttaaa |
38876816 |
T |
|
| Q |
231 |
gaagcaatccttgaatatg |
249 |
Q |
| |
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|| ||||| ||||| |||| |
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| T |
38876815 |
gatgcaattcttgattatg |
38876797 |
T |
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