View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_25 (Length: 331)
Name: NF15317_low_25
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 34572623 - 34572766
Alignment:
| Q |
1 |
gacgttcagattctgttgagtccttaattgaagcagttgagtttggagaatgcttatgattcataaaagaaacatggtccttataatgaagagaaattgt |
100 |
Q |
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| T |
34572623 |
gacgttcagattctgttgagtccttaattgaagcagttgagtttggagaatgcttatgattcataaaagaaacatggtccttataatgaagagaaattgt |
34572722 |
T |
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| Q |
101 |
aaggagaatcttccctgattatgcacaacacaagccattgagat |
144 |
Q |
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| T |
34572723 |
aaggagaatcttccctgattatgcacaacacaagccattgagat |
34572766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 204 - 313
Target Start/End: Original strand, 34572825 - 34572934
Alignment:
| Q |
204 |
caagaaattaaaaactatggttaaaccttcagaaaacagtgtacataaagtaaaaataaatgctaaatagtaatggaaataagttcaattcaacagttaa |
303 |
Q |
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| T |
34572825 |
caagaaattaaaaactatggttaaaccttcagaaaacagtgtacataaagtaaaaataaatgctaaatagtaatggaaataagttcaattcaacagttaa |
34572924 |
T |
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| Q |
304 |
ttcttgacct |
313 |
Q |
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|||||||||| |
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| T |
34572925 |
ttcttgacct |
34572934 |
T |
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