View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15317_low_26 (Length: 325)
Name: NF15317_low_26
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_26 |
 | |
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| [»] scaffold0007 (1 HSPs) |
| | |
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| [»] scaffold0434 (1 HSPs) |
| | |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 23409353 - 23409052
Alignment:
| Q |
8 |
ggacatcatcatgctgtttgaatttaccaaaagagttgtagagaaatttgttctgcacttttcttatagaaacacgttcagccctgctttggcttgtgtg |
107 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23409353 |
ggacaacatcatgctggttgaatttaccaaaagagttgtagagaaatttgttctgcacttttcttatagaaacacgttcagccctgctttggcttgtgtg |
23409254 |
T |
|
| Q |
108 |
ttagaacattcatctttgatttttcatgtgtaacttcactccaacagctcaatttattaatctaaaaattaacagaacaaaaactccaacaatttgtttg |
207 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
23409253 |
tt-gaacattcatctttgatttttcatgggtaacttcactccaacagctcaatttattaatctaaaaattaacagaacacaaaatccaacaatttgtttg |
23409155 |
T |
|
| Q |
208 |
gttagagacaaatagaaacaaaataaccaatacaactgaatatttttaaaattctcaactttgctcggtttgactttaaaagtactctgaattaattcaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
23409154 |
gttagagacaaatagaaacaaaataaccaatacaactgaatatttttaaaattctcaactttgttgggtttgactttaaaagtactctgaattaattcaa |
23409055 |
T |
|
| Q |
308 |
ctt |
310 |
Q |
| |
|
||| |
|
|
| T |
23409054 |
ctt |
23409052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 9954756 - 9954880
Alignment:
| Q |
185 |
caaaaactccaacaatttgtttggttagagacaaatagaaacaaaataaccaatacaactgaatatttttaaaattctcaactttgctcggtttgacttt |
284 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| || ||||| | ||| || || ||| || ||||||||||||| || ||||||| |||||||| | |
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|
| T |
9954756 |
caaaaactccaagaatttgttaggttagagagaattagaacaagaatgactaacacagttggatatttttaaaatcatcttttttgctcagtttgactat |
9954855 |
T |
|
| Q |
285 |
aaaagtactctgaattaattcaact |
309 |
Q |
| |
|
||||| | ||||||||||||||||| |
|
|
| T |
9954856 |
aaaagcattctgaattaattcaact |
9954880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 23689166 - 23689270
Alignment:
| Q |
185 |
caaaaactccaacaatttgtttggttagagacaaatagaaacaa-aataaccaatacaactgaatatttttaaaattctcaactttgctcggtttgactt |
283 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| || ||| ||||| |||||||||||||||| ||||||| ||||| ||| |||||| |||||||| |
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|
| T |
23689166 |
caaaaactccaagaatttgtttagttagagataattagcaacaagaataaccaatacaacttgatattttcaaaatcctcttttttgcttagtttgacta |
23689265 |
T |
|
| Q |
284 |
taaaa |
288 |
Q |
| |
|
||||| |
|
|
| T |
23689266 |
taaaa |
23689270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 46673016 - 46673145
Alignment:
| Q |
181 |
agaacaaaaactccaacaatttgtttggttagagacaaatagaaacaaaataaccaatacaactgaatatttttaaaattctcaactttgctcggtttga |
280 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||| | ||| ||| | ||||||| | || | |
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|
| T |
46673016 |
agaacaaaaactccaagaatttgtttagttagagacaattagaaacaaaataatcaatataactgaatattttcacaatcctctattttgctcagcttaa |
46673115 |
T |
|
| Q |
281 |
ctttaaaagtactctgaattaattcaactt |
310 |
Q |
| |
|
||||||||| ||||| || | ||||||||| |
|
|
| T |
46673116 |
ctttaaaagcactctaaaatgattcaactt |
46673145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 53436174 - 53436031
Alignment:
| Q |
50 |
gaaatttgttctgcacttttcttatagaaacacgttcagccctgctttggcttgtgtgttagaacattcatctttgatttttcatgtgtaacttcactcc |
149 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| ||||||||| || ||| ||||| | ||||||| ||||| | | |||||||| |
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|
| T |
53436174 |
gaaatttgttctgcacttttcttatggaaacaagttcagcccttctttggcttatgcgtt-gaaca-tgatctttggtttttttttt-----ttcactcc |
53436082 |
T |
|
| Q |
150 |
aacagctcaatttattaatctaaaaattaacagaacaaaaactccaacaatt |
201 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| |||||||||||||||| |||| |
|
|
| T |
53436081 |
aacaactcaatttatt-acctaaaaattaagagaacaaaaactccaagaatt |
53436031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 3216937 - 3217070
Alignment:
| Q |
181 |
agaacaaaaactccaacaatttgtttggttagagacaaatagaaacaa-aataaccaatacaactgaatatttttaaaattctc---aactttgctcggt |
276 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || || |||||| |||||| || |||| || ||||||| ||||| ||| ||||||| || |
|
|
| T |
3216937 |
agaacaaaaactccaaaaatttgtttggttagagagaactataaacaagaataactaacacaattggatattttcaaaatcctctttttttttgctcagt |
3217036 |
T |
|
| Q |
277 |
ttgactttaaaagtactctgaattaattcaactt |
310 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| |
|
|
| T |
3217037 |
ttgactttaaaagcactctgaattgattcaactt |
3217070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 559072 - 558941
Alignment:
| Q |
181 |
agaacaaaaactccaacaatttgtttggttagagacaaatagaaacaa-aataaccaatacaactgaatatttttaaaattctcaact-ttgctcggttt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || |||||| ||||||||| |||| || ||||||| ||||| ||| | |||||| |||| |
|
|
| T |
559072 |
agaacaaaaactccaacaatttgtttggttagagagaactataaacaagaataaccaacacaattggatattttcaaaatcctcttttcttgctcagttt |
558973 |
T |
|
| Q |
279 |
gactttaaaagtactctgaattaattcaactt |
310 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| |
|
|
| T |
558972 |
gactttaaaagcactctgaattgattcaactt |
558941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 467990 - 468060
Alignment:
| Q |
183 |
aacaaaaactccaacaatttgtttggttagagacaaatagaaacaaaataaccaatacaactgaatatttt |
253 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
467990 |
aacaaaaactccaagaatttgtttagttagagacaattagaaacaaaataaccaatacaactgaatatttt |
468060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 2879487 - 2879344
Alignment:
| Q |
50 |
gaaatttgttctgcacttttcttatagaaacacgttcagccctgctttggcttgtgtgttagaacattcatctttgatttttcatgtgtaacttcactcc |
149 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| ||||||||| || ||| ||||| | ||||||| ||||| | | |||||||| |
|
|
| T |
2879487 |
gaaatttgttctgcacttttcttatggaaacaagttcagcccttctttggcttatgcgtt-gaaca-tgatctttggtttttttttt-----ttcactcc |
2879395 |
T |
|
| Q |
150 |
aacagctcaatttattaatctaaaaattaacagaacaaaaactccaacaatt |
201 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| |||||||||||||||| |||| |
|
|
| T |
2879394 |
aacaactcaatttatt-acctaaaaattaagagaacaaaaactccaaaaatt |
2879344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 2867698 - 2867556
Alignment:
| Q |
50 |
gaaatttgttctgcacttttcttatagaaacacgttcagccctgctttggcttgtgtgttagaacattcatctttgatttttcatgtgtaacttcactcc |
149 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| ||||||||| || ||| ||||| | ||| ||| ||||| | |||||||| |
|
|
| T |
2867698 |
gaaatttgttctgcacttttcttatggaaacaagttcagcccttctttggcttatgcgtt-gaaca-tgatcgttggttttt------ttttttcactcc |
2867607 |
T |
|
| Q |
150 |
aacagctcaatttattaatctaaaaattaacagaacaaaaactccaacaatt |
201 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |||||||||||||||| |||| |
|
|
| T |
2867606 |
aacagctcaatttatt-acctaaaaattaagagaacaaaaactccaagaatt |
2867556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 274923 - 274794
Alignment:
| Q |
181 |
agaacaaaaactccaacaatttgtttggttagagacaaatagaaacaaaataaccaatacaactgaatatttttaaaattctcaactttgctcggtttga |
280 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||| || ||||| | ||| || || ||||||| ||||||| ||||| ||| |||||||||||||| |
|
|
| T |
274923 |
agaacaaaaactccaagagtttgttaggttagagagaattagaacaagaatgactaacacaactggatattttcaaaatcctcttttttgctcggtttga |
274824 |
T |
|
| Q |
281 |
ctttaaaagtactctgaattaattcaactt |
310 |
Q |
| |
|
|| |||||| |||||||||| ||||||||| |
|
|
| T |
274823 |
ctataaaagcactctgaattgattcaactt |
274794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0434 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0434
Description:
Target: scaffold0434; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 10446 - 10317
Alignment:
| Q |
181 |
agaacaaaaactccaacaatttgtttggttagagacaaatagaaacaaaataaccaatacaactgaatatttttaaaattctcaactttgctcggtttga |
280 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||| || ||||| | ||| || || | ||||| ||||||| ||||||||| ||||||| |||||| |
|
|
| T |
10446 |
agaacaaaaactccaagagtttgttaggttagagagaattagaacaagaatgactaacataactggatattttcaaaattctcttttttgctcagtttga |
10347 |
T |
|
| Q |
281 |
ctttaaaagtactctgaattaattcaactt |
310 |
Q |
| |
|
|| |||||| ||| |||||| ||||||||| |
|
|
| T |
10346 |
ctataaaagcactttgaattgattcaactt |
10317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 39431 - 39560
Alignment:
| Q |
181 |
agaacaaaaactccaacaatttgtttggttagagacaaatagaaacaaaataaccaatacaactgaatatttttaaaattctcaactttgctcggtttga |
280 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||| || ||||| | ||| || || ||||||| ||||||| ||||| ||| ||||| | |||||| |
|
|
| T |
39431 |
agaacaaaaactccaagagtttgttaggttagagagaattagaacaagaatgactaacacaactggatattttcaaaatcctcttttttgcgcagtttga |
39530 |
T |
|
| Q |
281 |
ctttaaaagtactctgaattaattcaactt |
310 |
Q |
| |
|
|| ||||| |||||||||| ||||||||| |
|
|
| T |
39531 |
ctataaaaacactctgaattgattcaactt |
39560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 44680248 - 44680377
Alignment:
| Q |
181 |
agaacaaaaactccaacaatttgtttggttagagacaaatagaaacaaaataaccaatacaactgaatatttttaaaattctcaactttgctcggtttga |
280 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||| | ||||| | ||| || || ||| ||| ||||||| ||||| ||| ||||||| |||||| |
|
|
| T |
44680248 |
agaacaaaaactccaagagtttgttaggttagagagagttagaacaagaatgactaacacagctggatattttcaaaatcctcttttttgctcagtttga |
44680347 |
T |
|
| Q |
281 |
ctttaaaagtactctgaattaattcaactt |
310 |
Q |
| |
|
|| |||||||||| |||||| ||||||||| |
|
|
| T |
44680348 |
ctataaaagtactttgaattgattcaactt |
44680377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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