View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_29 (Length: 302)
Name: NF15317_low_29
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 30393648 - 30393359
Alignment:
| Q |
1 |
acaggttttggttttcttagttttggaaggtctttagccaattattgtcattttaaattttctagatactcattgaaacaaactctagtgtctttatata |
100 |
Q |
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| T |
30393648 |
acaggttttggttttcttagttttggaaggtctttagccaattattgtcattttaaattttctagatactcattgaaacaaactctagtgtctttatata |
30393549 |
T |
|
| Q |
101 |
aattccataccaacattttgttactagttcttggtatggtaggttaatctcttttgtcatatcattgttgttgtttaaaatgccttgtgtattttttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393548 |
aattccataccaacattttgttactagttcttggtatggtaggttaatctcttttgtcatatcattgttgttgtttaaaatgccttgtgtattttttgaa |
30393449 |
T |
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| Q |
201 |
acaattgaacaaagtatggtgttcttcgcataccagtacttgtaacaagttattggtaggtgattctgttactttaataaaatctatatt |
290 |
Q |
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| T |
30393448 |
acaattgaacaaagtatggtgttcttcgcataccagtacttgtaactagttattggtaggtgattctgttactttaataaaatctatatt |
30393359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 30407242 - 30407125
Alignment:
| Q |
1 |
acaggttttggttttcttagttttggaaggtctttagccaattattgtcattttaaattttctagatactcattgaaacaaactctagtgtctttatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||||||||||||| | |
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| T |
30407242 |
acaggttttggttttcttagttttggaaggtctttagccaatcattatcattttaaattttctagatactcattgaaac--acactagtgtctttataca |
30407145 |
T |
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| Q |
101 |
aattccataccaacattttg |
120 |
Q |
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| ||||||||||| |||||| |
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| T |
30407144 |
atttccataccaatattttg |
30407125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 30407080 - 30407044
Alignment:
| Q |
238 |
acttgtaacaagttattggtaggtgattctgttactt |
274 |
Q |
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||||||||| |||||||||||||||||| |||||||| |
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| T |
30407080 |
acttgtaactagttattggtaggtgattttgttactt |
30407044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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