View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15317_low_3 (Length: 712)

Name: NF15317_low_3
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15317_low_3
NF15317_low_3
[»] scaffold0088 (1 HSPs)
scaffold0088 (24-701)||(51638-52304)
[»] chr2 (2 HSPs)
chr2 (37-432)||(29498877-29499269)
chr2 (542-701)||(29498093-29498245)
[»] chr3 (4 HSPs)
chr3 (125-402)||(12284758-12285035)
chr3 (158-402)||(19587289-19587533)
chr3 (507-626)||(12284004-12284123)
chr3 (507-626)||(19588168-19588287)
[»] scaffold0329 (2 HSPs)
scaffold0329 (125-402)||(10467-10744)
scaffold0329 (507-626)||(9713-9832)
[»] chr4 (4 HSPs)
chr4 (125-402)||(22177487-22177764)
chr4 (507-626)||(22178399-22178518)
chr4 (189-237)||(23168047-23168095)
chr4 (181-254)||(22642959-22643032)
[»] chr1 (2 HSPs)
chr1 (158-402)||(52777138-52777382)
chr1 (507-626)||(52776384-52776503)
[»] chr5 (1 HSPs)
chr5 (176-302)||(11923831-11923957)


Alignment Details
Target: scaffold0088 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 24 - 701
Target Start/End: Complemental strand, 52304 - 51638
Alignment:
24 acattgaacgtaatctttggtgtgacaaatgaccaagcctaaagtaccacaaagcattagcaggattaattttcctagatttacatgaaagaggtaaaat 123  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| | |||||||||||||||||||||||||| |||||    
52304 acattgaacgtaatctttggtgtgataaatgaccaagcctaaagtgccccaaagcattagcaggaattattttcctagatttacatgaaagaggaaaaat 52205  T
124 tgcattacaagatttattgagaaaactaaaagacacagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaacca 223  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||| ||||||||    
52204 tgcattgcaagatttattgagaatactaaaagacacaaaatttgaagaacatgaagatggaaaatatttctataagccatccggttgcttagccaaacca 52105  T
224 atcatcttcaaagacattttgtcctatataagaaaatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagac 323  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||     
52104 atcatcttcaaagacattttgtcctttataagaaaatgatcaagagaaaattgtaaagaacaaaataaggactgacacagcttagcaactgaaatgagat 52005  T
324 gaagagtaaaagttggtgaataaagaacatggctaagataaaaatgtgaagtaaaatagatagtgccaccataatgaaccaaaattgaatttccattaga 423  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
52004 gaagagtaaaagttggtgaataaagaacatggctgagataaatatgtgaagtaaaagagatagtgccaccataatgaaccaaaattgaatttctattaga 51905  T
424 taaagaaacgtgacccaatttaattaattctataaaagaaactataacaagatagattgcaacaaacatgttcattacctcctggatcaaggagtaaaac 523  Q
    ||||||||| ||| ||| |    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
51904 taaagaaacatgaaccagt----ttaattctataaaagaaactataacaagatagattgcaacaaacatgttcattagctcctggatcaaggagtaaaac 51809  T
524 ttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaaatgtagaagcttcacaa 623  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
51808 ttgtgttttgacaattgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaaacgtagaagcttcacaa 51709  T
624 cgaaatgtatcatgtatgaatgcaaactcagctaggaaaaggtctgtgtgaagctaattcttcccaaagtgtcttcat 701  Q
    ||||  |||     ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
51708 cgaa--gta-----tatgaatgcaaacacagctaggaataggtctgtgtgaagctaattcttcccaaagtgtcttcat 51638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 37 - 432
Target Start/End: Complemental strand, 29499269 - 29498877
Alignment:
37 tctttggtgtgacaaatgaccaagcctaaagtaccacaaagcattagcaggattaattttcctagatttacatgaaagaggtaaaattgcattacaagat 136  Q
    ||||||||| || ||||||||||| ||||||| |||||| |||||||  ||| || | || ||||| ||||||||| |||||||||   |||||||||||    
29499269 tctttggtgagataaatgaccaagtctaaagtgccacaaggcattagatggaatactattgctagaattacatgaacgaggtaaaacaacattacaagat 29499170  T
137 ttattgagaaaactaaaagacacagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaatcatcttcaaag 236  Q
    ||||||  |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||||    
29499169 ttattggaaaaactaaaagacatagaatttgaagtacatgaagatggaatgtatttgtataagtcatccagttgcttagccaaaccaatcatcttaaaag 29499070  T
237 acattttgtcctatataagaaaatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagacgaagagtaaaagt 336  Q
    | |   |||||| ||| |   |||||||||||| ||| ||||||||| |  |||| ||||  |||||||||||||| ||||||| |  ||||||||| ||    
29499069 atagcgtgtcctgtatgatgcaatgatcaagagtaaagtgtaaagaataggataaagact--cacaacttagcaacagaaatgatattaagagtaaatgt 29498972  T
337 tggtgaataaagaacatggctaagataaaaatgtgaagtaaaatagatagtgccaccataatgaaccaaaattgaatttccattagataaagaaac 432  Q
    |||||||||||||||||| || ||||||||||  ||||||||| |   | | ||| |||||| ||||||||| ||||||||||||| |||||||||    
29498971 tggtgaataaagaacatgactgagataaaaattggaagtaaaagaagcaataccagcataat-aaccaaaatggaatttccattaggtaaagaaac 29498877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 542 - 701
Target Start/End: Complemental strand, 29498245 - 29498093
Alignment:
542 aaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaaatgtagaagcttcacaacgaaatgtatcatgtatg 641  Q
    ||||||||||||||||| ||||||||||||||||||||  || ||||||||||||||||| |||| | |||||||||||||||||       ||||| ||    
29498245 aaactgatcattgagacctgtaagaaactgcatgatctagtcgtcattcctatgagttttagcaactctagaagcttcacaacga-------catgtgtg 29498153  T
642 aatgcaaactcagctaggaaaaggtctgtgtgaagctaattcttcccaaagtgtcttcat 701  Q
    ||| ||    || |||||||  ||||||||||||||||||||||||||||||| ||||||    
29498152 aatccatgaacaactaggaatgggtctgtgtgaagctaattcttcccaaagtgccttcat 29498093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 125 - 402
Target Start/End: Complemental strand, 12285035 - 12284758
Alignment:
125 gcattacaagatttattgagaaaactaaaagacacagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaa 224  Q
    ||||||||||||||||||  || ||||  | | |||||||||||||| || |||||||||  |||||||||||||||||||||||||||| |||||||||    
12285035 gcattacaagatttattggaaacactactaaaaacagaatttgaagagcaggaagatggagtgtatttgtataagccatccagttgcttagccaaaccaa 12284936  T
225 tcatcttcaaagacattttgtcctatataagaaaatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagacg 324  Q
    ||||||||||||||||| |||||| ||| |   ||||| ||  || ||| ||||||||  |  | ||||| | ||||| ||||||||| |||||||||      
12284935 tcatcttcaaagacattgtgtcctgtatgatgcaatgagcagaagtaaagtgtaaagagtatgacaatgattcacacagcttagcaacagaaatgagatt 12284836  T
325 aagagtaaaagttggtgaataaagaacatggctaagataaaaatgtgaagtaaaatagatagtgccaccataatgaac 402  Q
    | ||||||||| ||||||||| | |||||| || ||||||||||  ||||| ||| ||| ||| ||| |||| |||||    
12284835 atgagtaaaagctggtgaatataaaacatgactgagataaaaattggaagtgaaagagacagtaccaacatattgaac 12284758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 158 - 402
Target Start/End: Original strand, 19587289 - 19587533
Alignment:
158 acagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaatcatcttcaaagacattttgtcctatataagaa 257  Q
    |||||||||||||| || |||||||||  | |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||| |       
19587289 acagaatttgaagagcaggaagatggagtgcatttgtataagccatccatttgcttagccaaaccaatcatcttcaaagacattgtgtcctgtatgatgc 19587388  T
258 aatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagacgaagagtaaaagttggtgaataaagaacatggct 357  Q
    ||||| ||  ||  || ||||||||  |  | ||||| | ||||||||||||||| |||||||||  | ||||||||| ||||||||| | |||||| ||    
19587389 aatgagcagaagtgaagtgtaaagagtatgacaatgattcacacaacttagcaacagaaatgagattatgagtaaaagctggtgaatataaaacatgact 19587488  T
358 aagataaaaatgtgaagtaaaatagatagtgccaccataatgaac 402  Q
     ||||||||||  ||||| ||| ||| ||| ||| |||| |||||    
19587489 gagataaaaattggaagtgaaagagacagtaccagcatattgaac 19587533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 507 - 626
Target Start/End: Complemental strand, 12284123 - 12284004
Alignment:
507 ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa 606  Q
    |||||||| ||||| ||||||||  | ||| | ||||||| ||||||||||| ||| ||||||||||| ||||| |||||||| ||||||||||| ||||    
12284123 ggatcaagaagtaacacttgtgtccttacaatggaaaactaatcattgagacctgtgagaaactgcataatctggtcctcatttctatgagttttagcaa 12284024  T
607 atgtagaagcttcacaacga 626  Q
       | |||||||||||||||    
12284023 cccttgaagcttcacaacga 12284004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 507 - 626
Target Start/End: Original strand, 19588168 - 19588287
Alignment:
507 ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa 606  Q
    |||||||| ||||| ||||||||  | ||| | ||||| ||||||||||||| ||| ||||||||||| ||||| |||||||| ||||||||||| ||||    
19588168 ggatcaagaagtaacacttgtgtccttacaatggaaaattgatcattgagacctgtgagaaactgcataatctggtcctcatttctatgagttttagcaa 19588267  T
607 atgtagaagcttcacaacga 626  Q
       | |||||||||||||||    
19588268 cccttgaagcttcacaacga 19588287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 125 - 402
Target Start/End: Complemental strand, 10744 - 10467
Alignment:
125 gcattacaagatttattgagaaaactaaaagacacagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaa 224  Q
    |||||||||||||||| |  || ||||  | | |||||||||||||| || |||||||||  |||||||||||||||||||||||||||| |||||||||    
10744 gcattacaagatttatgggaaacactactaaaaacagaatttgaagagcaggaagatggagtgtatttgtataagccatccagttgcttagccaaaccaa 10645  T
225 tcatcttcaaagacattttgtcctatataagaaaatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagacg 324  Q
    ||||||||||||||||| |||||| ||| |   ||||| ||  ||  || ||||||||  |  | ||||| | ||||| ||||||||| |||||||||      
10644 tcatcttcaaagacattgtgtcctgtatgatgcaatgagcagaagtgaagtgtaaagagtatgacaatgattcacacagcttagcaacagaaatgagatt 10545  T
325 aagagtaaaagttggtgaataaagaacatggctaagataaaaatgtgaagtaaaatagatagtgccaccataatgaac 402  Q
    | ||||||||| ||||||||| | |||||| || ||||||||||  ||||| ||| ||| ||| ||| |||| |||||    
10544 atgagtaaaagctggtgaatataaaacatgactgagataaaaattggaagtgaaagagacagtaccagcatattgaac 10467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 507 - 626
Target Start/End: Complemental strand, 9832 - 9713
Alignment:
507 ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa 606  Q
    |||||||| ||||| ||||||||  | ||| | ||||| ||||||||||||| ||| ||||||||||| || || |||||||| |||||| |||| ||||    
9832 ggatcaagaagtaacacttgtgtccttacaatggaaaattgatcattgagacctgtgagaaactgcataatttggtcctcatttctatgaattttagcaa 9733  T
607 atgtagaagcttcacaacga 626  Q
       | |||||||||||||||    
9732 cctttgaagcttcacaacga 9713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 125 - 402
Target Start/End: Original strand, 22177487 - 22177764
Alignment:
125 gcattacaagatttattgagaaaactaaaagacacagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaa 224  Q
    |||||||||||||||| |  || ||||  | | |||||||||||||| || |||||||||  |||||||||||||||||||||||||||| |||||||||    
22177487 gcattacaagatttatgggaaacactactaaaaacagaatttgaagagcaggaagatggagtgtatttgtataagccatccagttgcttagccaaaccaa 22177586  T
225 tcatcttcaaagacattttgtcctatataagaaaatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagacg 324  Q
    ||||||||||||||||| |||||| ||| |   ||||| ||  ||  || ||||||||  |  | ||||| | ||||| ||||||||| |||||||||      
22177587 tcatcttcaaagacattgtgtcctgtatgatgcaatgagcagaagtgaagtgtaaagagtatgacaatgattcacacagcttagcaacagaaatgagatt 22177686  T
325 aagagtaaaagttggtgaataaagaacatggctaagataaaaatgtgaagtaaaatagatagtgccaccataatgaac 402  Q
    | ||||||||| ||||||||| | |||||| || ||||||||||  ||||| ||| ||| ||| ||| |||| |||||    
22177687 atgagtaaaagctggtgaatataaaacatgactgagataaaaattggaagtgaaagagacagtaccagcatattgaac 22177764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 507 - 626
Target Start/End: Original strand, 22178399 - 22178518
Alignment:
507 ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa 606  Q
    |||||||| ||||| ||||||||  | ||| | ||||| ||||||||||||| ||| ||||||||||| || || |||||||| |||||| |||| ||||    
22178399 ggatcaagaagtaacacttgtgtccttacaatggaaaattgatcattgagacctgtgagaaactgcataatttggtcctcatttctatgaattttagcaa 22178498  T
607 atgtagaagcttcacaacga 626  Q
       | |||||||||||||||    
22178499 cctttgaagcttcacaacga 22178518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 23168047 - 23168095
Alignment:
189 atttgtataagccatccagttgcttaaccaaaccaatcatcttcaaaga 237  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||||    
23168047 atttgtataagccatccatctgcttagccaaaccaatcatcttcaaaga 23168095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 22643032 - 22642959
Alignment:
181 tggaaagtatttgtataagccatccagttgcttaaccaaaccaatcatcttcaaagacattttgtcctatataa 254  Q
    ||||| ||||||||||||||| | || ||||||| | ||||||||| |||||| |||||  ||||||| |||||    
22643032 tggaatgtatttgtataagcccttcatttgcttagcaaaaccaatcgtcttcagagacaaattgtcctgtataa 22642959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 158 - 402
Target Start/End: Complemental strand, 52777382 - 52777138
Alignment:
158 acagaatttgaagaacatgaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaatcatcttcaaagacattttgtcctatataagaa 257  Q
    |||||||||||||| || |||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| |       
52777382 acagaatttgaagagcaggaagatggagtgtatttgtataagccatccagttgcttagccaaaccaatcatcttcaaagacattgtgtcctgtatgatgc 52777283  T
258 aatgatcaagagaaaattgtaaagaacaaaataatgactgacacaacttagcaactgaaatgagacgaagagtaaaagttggtgaataaagaacatggct 357  Q
    ||||| ||  ||  || ||||||||  |  | ||||| | ||||| ||||||||| |||||||||  | ||||||||| ||||||||| | |||||| ||    
52777282 aatgagcagaagtgaagtgtaaagagtatgacaatgattcacacagcttagcaacagaaatgagattatgagtaaaagctggtgaatataaaacatgact 52777183  T
358 aagataaaaatgtgaagtaaaatagatagtgccaccataatgaac 402  Q
     ||||||||||  ||||| ||| ||| ||| ||| |||| |||||    
52777182 gagataaaaattggaagtgaaagagacagtaccagcatattgaac 52777138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 507 - 626
Target Start/End: Complemental strand, 52776503 - 52776384
Alignment:
507 ggatcaaggagtaaaacttgtgttttgacagttgaaaactgatcattgagacatgtaagaaactgcatgatctgatcctcattcctatgagttttggcaa 606  Q
    |||||||| ||||| ||||||||  | ||| | ||||| |||||||||||||  || ||||||||||| || || |||||||| |||||| |||| ||||    
52776503 ggatcaagaagtaacacttgtgtccttacaatggaaaattgatcattgagaccggtgagaaactgcataatttggtcctcatttctatgaattttagcaa 52776404  T
607 atgtagaagcttcacaacga 626  Q
       | |||||||||||||||    
52776403 cctttgaagcttcacaacga 52776384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 176 - 302
Target Start/End: Complemental strand, 11923957 - 11923831
Alignment:
176 gaagatggaaagtatttgtataagccatccagttgcttaaccaaaccaatcatcttcaaagacattttgtcctatataagaaaatgatcaagagaaaatt 275  Q
    ||||| |||| |||||||||||||||||  | || |||| ||||||| |||||||||||||||||||| |||  ||||| | | ||||||||||| ||||    
11923957 gaagaaggaatgtatttgtataagccataaattttcttagccaaaccgatcatcttcaaagacattttctcccgtataatacattgatcaagagagaatt 11923858  T
276 gtaaagaacaaaataatgactgacaca 302  Q
    |||||  |||| |||| || |||||||    
11923857 gtaaaatacaagataaggattgacaca 11923831  T

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