View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15317_low_34 (Length: 263)
Name: NF15317_low_34
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_34 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 44317394 - 44317160
Alignment:
| Q |
18 |
aggagaagtacccgaagatatgcaagcatttgtgttgaagaaaagacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagctttt |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44317394 |
aggagaagtacccgaagatatgcaagcctttgtgttgaagaaaagacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagctttt |
44317295 |
T |
|
| Q |
118 |
catggtggaagccaaattctagagtctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44317294 |
catggtggaagccaaattctagagtctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaa |
44317195 |
T |
|
| Q |
218 |
atgaggggttagaactatttatggagggtgtaatt |
252 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
44317194 |
atgaggggttagaactatttatggagggtgtaatt |
44317160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 43896754 - 43896504
Alignment:
| Q |
22 |
gaagtacccgaagatatgcaagcatttgtgttgaagaaaagacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatg |
121 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||||||| | |
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| T |
43896754 |
gaagtacctgaagatatgcaagcctttgtgttgaagaaaagaagcgaactcattgaaatcgtctcagaggttgatgataaactttctgaagcttttcacg |
43896655 |
T |
|
| Q |
122 |
gtggaagccaaattctagagtctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaattatc------ttta---gtgatga |
212 |
Q |
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|||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| |
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| T |
43896654 |
gtggcagccaaatttcagaatctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaattttcatgggtgttatctgtgatga |
43896555 |
T |
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| Q |
213 |
gagaaatgaggggttagaactatttatggagggtgtaattaggtatttgcc |
263 |
Q |
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|||| |||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
43896554 |
gagacatgatgggttagaactacttatggagggtgtaattaggtatttgcc |
43896504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 44302110 - 44301852
Alignment:
| Q |
18 |
aggagaagtacccgaagatatgcaagcatttgtgttgaagaaaagacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagctttt |
117 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
44302110 |
aggagaagtacccaaagatatgcaagcctttgtgttgaagaaaagacgcgaactcattgaaattgtatcggaggttgatgataaactttctgaagctttt |
44302011 |
T |
|
| Q |
118 |
catggtggaagccaaattctagagtctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaat---------tatctttagtg |
208 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||| ||||||||||||||| ||| | |||| |
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| T |
44302010 |
catggtggaagccaaattctagagtcttatctcgatgatgcaattcgtggggcaaccatagcaaggaaatttgtaccaatttttatgggtattatcagtg |
44301911 |
T |
|
| Q |
209 |
atgagagaaatgagggg----ttagaactatttatggagggtgtaattaggtatttgcc |
263 |
Q |
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||||||| |||||||| ||||||||| ||||||||| |||||||||||||||||| |
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| T |
44301910 |
gtgagagatatgaggggttaattagaactacttatggaggatgtaattaggtatttgcc |
44301852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 263
Target Start/End: Complemental strand, 44307209 - 44306958
Alignment:
| Q |
21 |
agaagtacccgaagatatgcaagcatttgtgttgaagaaaagacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcat |
120 |
Q |
| |
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||||||| || ||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44307209 |
agaagtagccaaagatatgcaagcctttgtgttgaaaaaaagacgtgaactcattgaaattgtatcagaggttgatgataaactttctgaagattttcat |
44307110 |
T |
|
| Q |
121 |
ggtggaagccaaattctagagtctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaattatc---------tttagtgatg |
211 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| || || ||||| | |
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| T |
44307109 |
ggtggcagccaaatttcagagtctgttctcgatgatgcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggtactttcagtgacg |
44307010 |
T |
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| Q |
212 |
agagaaatgaggggttagaactatttatggagggtgtaattaggtatttgcc |
263 |
Q |
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||||| | ||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
44307009 |
agagatacgaggggttagaactacttagggagggtgtaattaggtatttgcc |
44306958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 18702357 - 18702112
Alignment:
| Q |
18 |
aggagaagtacccgaagatatgcaagcatttgtgttgaagaaaagacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagctttt |
117 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| |||||||| |
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| T |
18702357 |
aggagaaatacccgaagatatgcaagcctttgtgttgaagaaaagacgcgaactcattgaaattgtgtcagaggttgatgataaactttctaaagctttt |
18702258 |
T |
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| Q |
118 |
catggtggaagccaaattctagagtctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaa |
217 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
18702257 |
catggtggcagcaaaattccagagtctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaattatcattggtgatgagagct |
18702158 |
T |
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| Q |
218 |
atgaggggttagaactatttatggagggtgtaattaggtatttgcc |
263 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||||||||||| |
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| T |
18702157 |
atgagacgttaaaactattaatggagggtgtaattaggtatttgcc |
18702112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 8158609 - 8158852
Alignment:
| Q |
20 |
gagaagtacccgaagatatgcaagcatttgtgttgaagaaaagacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttca |
119 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||| |
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| T |
8158609 |
gagaagtacccaaagatatgcaagcctttgtgttgaaaaaaagacacgaactcattgaaattgtatcagagattgatgataaaatttctgaagctcttca |
8158708 |
T |
|
| Q |
120 |
tggtggaagccaaattctagagtctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaaat |
219 |
Q |
| |
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|||||| |||||||||| ||||||| ||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||| | |||||||||||| || |
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| T |
8158709 |
tggtggcagccaaattccagagtcttatctggatgatgcaattcggagggcaactatagcaaggaaatttgtaccaattatcataagtgatgagagatat |
8158808 |
T |
|
| Q |
220 |
gaggggttagaactatttatggagggtgtaattaggtatttgcc |
263 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
8158809 |
gaggggatagaagtatttatggagggtgtaattaggtatttgcc |
8158852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 4084860 - 4084622
Alignment:
| Q |
25 |
gtacccgaagatatgcaagcatttgtgttgaagaaaagacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtg |
124 |
Q |
| |
|
||||| ||||| ||| |||| ||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||| |
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| T |
4084860 |
gtacctgaagaaatgaaagcctttgtgttgaaaaaaagacgcgaactcattgaaattgtatcagaggttgatgataaaatttatgaagctcttcatggtg |
4084761 |
T |
|
| Q |
125 |
gaagccaaattctagagtctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaaatgaggg |
224 |
Q |
| |
|
| |||||||||| ||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||| ||||||| |
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| T |
4084760 |
gcagccaaattccagagtcttatctcgatggtgcaattcgtagggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggg |
4084661 |
T |
|
| Q |
225 |
gttagaactatttatggagggtgtaattaggtatttgcc |
263 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
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| T |
4084660 |
gttaaaactatttatggagggtgtaattaggtatttgcc |
4084622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 10545729 - 10545633
Alignment:
| Q |
21 |
agaagtacccgaagatatgcaagcatttgtgttgaagaaaagacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagctttt |
117 |
Q |
| |
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|||||| |||||||||||| |||| || |||| | ||||| || |||||||| ||| |||||||||||| || ||||||||| ||||||||||| |
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| T |
10545729 |
agaagttcccgaagatatggaagccttggtgtcagaaaaaaggcatgaactcataaaaactgtatcagaggtagacgataaacttgctgaagctttt |
10545633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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