View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_39 (Length: 241)
Name: NF15317_low_39
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 43395037 - 43395212
Alignment:
| Q |
18 |
caaagggtcactaaacctacnnnnnnngatggcagagacactacgtagggaagaaccaccacctgacctaacagatttcatgaatgacatgttttttggg |
117 |
Q |
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| T |
43395037 |
caaagggtcactaaacctacaaaaaaagatggcagagacactacgtagggaagaaccaccacctgacctaacagatttcatgaatgacatgttttttggg |
43395136 |
T |
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| Q |
118 |
acagtggacactcaccagaaaacctatgacctcactggtggggttggtatgaacatggatgatgatgaggaagatg |
193 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43395137 |
acagtagacactcaccagaaaacctatgacctcactggtggggttggtatgaacatggatgatgatgaggaagatg |
43395212 |
T |
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