View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15317_low_40 (Length: 237)
Name: NF15317_low_40
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 14682388 - 14682595
Alignment:
| Q |
11 |
gagcagagaatcaacatcttcaacagaagtttcaatctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataatta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14682388 |
gagcagagaatcaacatcttcaacagaagtttcaatctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataatta |
14682487 |
T |
|
| Q |
111 |
tgaaaaattgttgaaggaagttaagaaaactacttcagggtttagagaaacaatttctgagttagaaaagaagaacagtgatttggagttggaagtttct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14682488 |
tgaaaaattgttgaaggaagttaagaaaactacttcagggtttagagaaacaatttctgagttagaaaagaagaacagtgatttggagttggaagtttct |
14682587 |
T |
|
| Q |
211 |
gagcttag |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
14682588 |
gagcttag |
14682595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 41686541 - 41686445
Alignment:
| Q |
39 |
gtttcaatctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataattatgaaaaattgttgaaggaagttaag |
135 |
Q |
| |
|
||||||| |||||||||| ||||| || || |||||| | ||||| ||||||| || |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41686541 |
gtttcaagctgaggaagatttgagaaaaagagaggaactttgtgaaagagggataagagcacaaaataattatgaaaaattgttgaaggaagttaag |
41686445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 41708919 - 41708818
Alignment:
| Q |
39 |
gtttcaatctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataattatgaaaaattgttgaaggaagttaagaaa |
138 |
Q |
| |
|
||||||| | |||||||| ||||| || || |||||| ||||||| | |||||||| |||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
41708919 |
gtttcaagccgaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcacaaaataattatgaaaagttattgaaggaagttaagaaa |
41708820 |
T |
|
| Q |
139 |
ac |
140 |
Q |
| |
|
|| |
|
|
| T |
41708819 |
ac |
41708818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 41717991 - 41717890
Alignment:
| Q |
39 |
gtttcaatctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataattatgaaaaattgttgaaggaagttaagaaa |
138 |
Q |
| |
|
||||||| | |||||||| ||||| || || |||||| ||||||| | |||||||| |||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
41717991 |
gtttcaagccgaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcacaaaataattatgaaaagttattgaaggaagttaagaaa |
41717892 |
T |
|
| Q |
139 |
ac |
140 |
Q |
| |
|
|| |
|
|
| T |
41717891 |
ac |
41717890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 14690872 - 14690964
Alignment:
| Q |
47 |
ctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataattatgaaaaattgttgaaggaagttaagaaaa |
139 |
Q |
| |
|
|||||||||| |||| |||||| |||||| |||||||||||| |||| |||||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
14690872 |
ctgaggaagatttgaagaagagtgaggaactgtgtgagagagctaaaatggcacagaataattatgaaaaatcgttgatggaaattaagaaaa |
14690964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 41659546 - 41659443
Alignment:
| Q |
39 |
gtttcaatctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataattatgaaaaattgttgaaggaagttaagaaa |
138 |
Q |
| |
|
||||||| |||| ||||| ||||| || || |||||| | || || ||||| |||| ||||||| ||||||||||| ||||||| |||||||||||||| |
|
|
| T |
41659546 |
gtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagggcacagagtaattatgaaacattgttggaggaagttaagaaa |
41659447 |
T |
|
| Q |
139 |
acta |
142 |
Q |
| |
|
|||| |
|
|
| T |
41659446 |
acta |
41659443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 41687791 - 41687883
Alignment:
| Q |
39 |
gtttcaatctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataattatgaaaaattgttgaaggaagt |
131 |
Q |
| |
|
||||||| ||||||||| ||||||| || |||||| | ||||| |||||||||| |||||| | ||||||||| ||||||||||||||| |
|
|
| T |
41687791 |
gtttcaagttgaggaagatgtgaggaaaagagaggaactatgtgaaagagggaaaagagcacaacaaaattatgaagcattgttgaaggaagt |
41687883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University