View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_41 (Length: 235)
Name: NF15317_low_41
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 25184033 - 25184250
Alignment:
| Q |
1 |
tgttcctttcagtggacccgtgagtttcaccattttgatgtatacatacaaagtgaagattctaaaatatgtggtaatacttgcaattggtctgtaaaaa |
100 |
Q |
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| T |
25184033 |
tgttcctttcagtggaccggtgagtttcaccattttgatgtatacatacaaagtgaagattctaaaatatgtggtaatacttgcaattggtctgtaaaaa |
25184132 |
T |
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| Q |
101 |
atactgtaatatgccggactacatcttacgagggttatatttgttttcaatggcattaagtaattattattaacgtaataaatttgtaatcttaataaat |
200 |
Q |
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| T |
25184133 |
atactgtaatatgccggactacatcttacgagggttatatttgttttcaatggcattaagtaattattattaacgtaataaatttgtaatcttaataaat |
25184232 |
T |
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| Q |
201 |
gttgtacgtggagtactt |
218 |
Q |
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|||||||||||||||||| |
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| T |
25184233 |
gttgtacgtggagtactt |
25184250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 25228974 - 25229180
Alignment:
| Q |
1 |
tgttcctttcagtggacccgtgagtttcaccattttgatgtatacatacaaagtgaagattctaaaatatgtggtaatacttgcaattggtctgtaaaaa |
100 |
Q |
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||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||| || |
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| T |
25228974 |
tgttcatttcagtggaccggtgagtttcactattttgatgtatacatagcaagtgaagattctaaaagatgtg---atacttgcaattggtctataacaa |
25229070 |
T |
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| Q |
101 |
atactgtaatatgccggactacatcttacgagggttatatttgttttcaatggcattaagtaattattattaacgtaataaatttgtaatcttaataaat |
200 |
Q |
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| T |
25229071 |
atcctggaccatgtcgcaatacatctcaagagggtaatgtttgttttcattgg----aataaataattattaatgtaataaatttgcaatcttaataaat |
25229166 |
T |
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| Q |
201 |
gttgtacgtggagt |
214 |
Q |
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| |||| |||||| |
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| T |
25229167 |
gccgtacttggagt |
25229180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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