View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_45 (Length: 223)
Name: NF15317_low_45
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 31061208 - 31061031
Alignment:
| Q |
18 |
gaagacatttcaagttattgtgcaagcaaccagtgtgactccaaggaggaaataccaatttggagaattgcgatggtcaaatggaaaacacatcgtaagg |
117 |
Q |
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||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
31061208 |
gaagacatttcaagttattgttcaagcaacaagtgagattccaaggaggaaataccaatttggagaattgagatggacaaatggaaaacacatcgtaagg |
31061109 |
T |
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| Q |
118 |
agccccgttactgttcggcgcaactgaaagatcatttctaagttggttgagttatgataataaaatgtagatgcatat |
195 |
Q |
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|||||||||||||||| ||||| |||||||| |||||| |||||||| |||||||| |||||||||||||||||||| |
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| T |
31061108 |
agccccgttactgttcaacgcaaatgaaagattatttctgagttggttcagttatgacaataaaatgtagatgcatat |
31061031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 31106542 - 31106413
Alignment:
| Q |
18 |
gaagacatttcaagttattgtgcaagcaaccagtgtgactccaaggaggaaataccaatttggagaattgcgatggtcaaatggaaaacacatcgtaagg |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||||| |
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| T |
31106542 |
gaagacatttcaagttattgtgcaagcaacaagtgtgactccaaggaggaaataccaatttggggaactgcgatggacaaatggaaaacacattgtaagg |
31106443 |
T |
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| Q |
118 |
agccccgttactgttcggcgcaactgaaag |
147 |
Q |
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| T |
31106442 |
agtcctgttactgttcggcgcaaatgaaag |
31106413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 31048808 - 31048677
Alignment:
| Q |
18 |
gaagacatttcaagttattgtgcaagcaaccagtgtgactccaaggaggaaataccaatttggagaattgcgatggtcaaatggaaaacacatcgtaagg |
117 |
Q |
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| T |
31048808 |
gaagaaatttcaagttattgtgcaagcaagaagtgtgactccaaggggaagataccaatttggagaactgcaatggacaaatggaaaacacattgtaagg |
31048709 |
T |
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| Q |
118 |
agccccgttactgttcggcgcaactgaaagat |
149 |
Q |
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| T |
31048708 |
agtcccgttactgttcaacgcaaatgaaagat |
31048677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 31143788 - 31143672
Alignment:
| Q |
18 |
gaagacatttcaagttattgtgcaagcaaccagtgtgactccaaggaggaaataccaatttggagaattgcgatggtcaaatggaaaacacatcgtaagg |
117 |
Q |
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|||||||||| |||||| |||||||||||| |||||||||||| | | |||||| ||||||||||| ||| ||||||||||||||||||||| |||||| |
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| T |
31143788 |
gaagacatttaaagttactgtgcaagcaacaagtgtgactccacagggaaaatacgaatttggagaactgcaatggtcaaatggaaaacacattgtaagg |
31143689 |
T |
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| Q |
118 |
agccccgttactgttcg |
134 |
Q |
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|| ||| ||||| |||| |
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| T |
31143688 |
agtcccattactcttcg |
31143672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 31161614 - 31161498
Alignment:
| Q |
18 |
gaagacatttcaagttattgtgcaagcaaccagtgtgactccaaggaggaaataccaatttggagaattgcgatggtcaaatggaaaacacatcgtaagg |
117 |
Q |
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|||||||||| |||||| |||||||||||| |||||||||||| | | |||||| ||||||||||| ||| ||||||||||||||||||||| |||||| |
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| T |
31161614 |
gaagacatttaaagttactgtgcaagcaacaagtgtgactccacagggaaaatacgaatttggagaactgcaatggtcaaatggaaaacacattgtaagg |
31161515 |
T |
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| Q |
118 |
agccccgttactgttcg |
134 |
Q |
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|| ||| ||||| |||| |
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| T |
31161514 |
agtcccattactcttcg |
31161498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 31243717 - 31243601
Alignment:
| Q |
18 |
gaagacatttcaagttattgtgcaagcaaccagtgtgactccaaggaggaaataccaatttggagaattgcgatggtcaaatggaaaacacatcgtaagg |
117 |
Q |
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|||||||||| |||||| |||||||||||| |||||||||||| | | |||||| ||||||||||| ||| ||||||||||||||||||||| |||||| |
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| T |
31243717 |
gaagacatttaaagttactgtgcaagcaacaagtgtgactccacagggaaaatacgaatttggagaactgcaatggtcaaatggaaaacacattgtaagg |
31243618 |
T |
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| Q |
118 |
agccccgttactgttcg |
134 |
Q |
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|| ||| ||||| |||| |
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| T |
31243617 |
agtcccattactcttcg |
31243601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 31203584 - 31203685
Alignment:
| Q |
18 |
gaagacatttcaagttattgtgcaagcaaccagtgtgactccaaggaggaaataccaatttggagaattgcgatggtcaaatggaaaacacatcgtaagg |
117 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| || || | |||| |||| || |||| |||||||| |||||| |
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| T |
31203584 |
gaagacattccaagttattgtgcaagcaaccaatgtgactccacgggggaaataccagttcgggaatttgcaatggacagatgggaaacacattgtaagg |
31203683 |
T |
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| Q |
118 |
ag |
119 |
Q |
| |
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|| |
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| T |
31203684 |
ag |
31203685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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