View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_46 (Length: 218)
Name: NF15317_low_46
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 10540293 - 10540236
Alignment:
| Q |
18 |
aaaataaaattggaggaaccgacttcaaacaaacaaaccctattttccaaaccctatt |
75 |
Q |
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| T |
10540293 |
aaaataaaattggaggaaccgacttcaaacaaacaaaccctattttccaaaccctatt |
10540236 |
T |
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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 10540248 - 10540188
Alignment:
| Q |
99 |
tccaaaccctattcctcatcggtcagacacctcggcagattccgactcattttcttcattgg |
160 |
Q |
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| T |
10540248 |
tccaaaccctattcctcatcg-tcagaaacctcggcagattccgactcatcttcttcattgg |
10540188 |
T |
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