View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15317_low_6 (Length: 663)
Name: NF15317_low_6
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 292 - 649
Target Start/End: Original strand, 8694852 - 8695209
Alignment:
| Q |
292 |
ataatctgaggacttctagctagccgcaattcatattaagaagcttaaaagaaaataaaatattgtagtagaaagactagattctctttttaatttagtg |
391 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8694852 |
ataatctgaggacttctagctagccacaattcatattaagaagcttaaaagaaaataaaatattgtagtagaaagactagcttctctttttaatttagtg |
8694951 |
T |
|
| Q |
392 |
attgataggaggcttttaggtttttataggtggtaaaagcttatgtannnnnnncaaagattagtcaaattttcaaacgcatctttgttggataaacatg |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8694952 |
attgataggaggcttttaggtttttataggtggtaaaagcttatgtatttttttcgaagattagtcaaattttcaaacgcatctttgttggatatacatg |
8695051 |
T |
|
| Q |
492 |
ggagggtagaggtgaagttctctgaaaatttagagattcttttgttttaacgttaagaaagatagaaatagagagtgatgtaataagcgcgataagtaga |
591 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8695052 |
ggaggatagaggtgaaattctgtgaaaatttagagattctttcgttttaacgttaagaaagatagaaatagagagtgatgtaataagcgcgataagtaga |
8695151 |
T |
|
| Q |
592 |
tgatgtgatagagatagatgatgtaaaaagtaatagtcttatttttaagtagtataat |
649 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8695152 |
tgatgtgatagaaatagatgatgtaaaaagtaatagtcttatttttaagtagtataat |
8695209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 8693359 - 8693638
Alignment:
| Q |
20 |
gctttgtttcaaagttatgctacaaggtatcgacaagcagccatggctagaacttcgaagaagccatgaaaaactttaaatcataccttattttgtcacc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8693359 |
gctttgtttcaaagttatgctacaaggtatcgacaagcagccacggctagaacttcgaagaagccatgaaaaactttaaatcataccttattttgtcacc |
8693458 |
T |
|
| Q |
120 |
ccttgtttgttcatgtatatgatacatgttttttctttgggtggttttacatcgttatttatctaatattgatgtatttgaatgtatgatttacttaact |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8693459 |
ccttgtttgttcatgtatatgatacatgttttttctttgggtggttttacatcgttatttatctaatattgatgtatttgaatgtatgatttacttaact |
8693558 |
T |
|
| Q |
220 |
ataatttaatttaataatacttatgctagtttaattttgttatgagtactttcattccttggtaatggttatataatctg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8693559 |
ataatttaatttaataatacttatgctagtttaattttgttatgagtactttcattccttggtaatggttatataatctg |
8693638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 8687338 - 8687038
Alignment:
| Q |
20 |
gctttgtttcaaagttatgctacaaggtatcgacaagcagccatggctagaacttcgaagaagccatgaaaaactttaaatcataccttattttgtcacc |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
8687338 |
gctttgtttcaaagttatgctactaggtatcgacaagcagc---ggctagaaccgtcaagaagccatgaaaaacttgaaatcataccttattttatcacc |
8687242 |
T |
|
| Q |
120 |
ccttgtttgttcatgtatatgatacatgttttttctttgggtggttttacatcgttatttatcta----atattgatgtatttgaatgtatgatttactt |
215 |
Q |
| |
|
|||||||||| ||||||||| | ||||||||||||||||||||||||||||| |||||||| ||| |||||||||| | ||||| ||||||| |||| |
|
|
| T |
8687241 |
ccttgtttgtccatgtatat-acacatgttttttctttgggtggttttacatagttatttagctagggtatattgatgtgtatgaatatatgattaactt |
8687143 |
T |
|
| Q |
216 |
aactataatttaatttaat---aatacttatgctagtttaattttgtta-tgagtactttcattccttggtaatggttatataatctgaggacttctagc |
311 |
Q |
| |
|
| ||| ||||| ||||| |||||||||||| |||||||||| ||| |||||| |||||| | ||||| | ||||| |||||||||||||||||||| |
|
|
| T |
8687142 |
cattattatttatgttaataaaaatacttatgctggtttaattttattattgagtattttcatgcgttggttaaggttaaataatctgaggacttctagc |
8687043 |
T |
|
| Q |
312 |
tagcc |
316 |
Q |
| |
|
||||| |
|
|
| T |
8687042 |
tagcc |
8687038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 8675128 - 8675352
Alignment:
| Q |
20 |
gctttgtttcaaagttatgctacaaggtatcgacaagcagccatggctagaacttcgaagaagccatgaaaaac-tttaaatcataccttattttgtcac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
8675128 |
gctttgtttcaaagttatgctacaaggtatcgacaagcagccacggctagaactgtcaagaagccatgaaaaacttttaaatcataacttattttatcac |
8675227 |
T |
|
| Q |
119 |
cccttgtttgttcatgtatatg--atacatgttttttctttgggtggttttacatcgttatttatc-----taatattgatgtatttgaatgtatgattt |
211 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
8675228 |
cccttgtttgtccatgtatatgatatacatgttttttcttcgggtggttttacatagttctttatctagtttaatattgatgtatatgaatgtatgatta |
8675327 |
T |
|
| Q |
212 |
acttaactataatttaatttaataa |
236 |
Q |
| |
|
|||| | ||| ||||| ||||||| |
|
|
| T |
8675328 |
acttcattattatttatgttaataa |
8675352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 8695907 - 8695752
Alignment:
| Q |
20 |
gctttgtttcaaagttatgctacaaggtatcgacaagcagccatggctagaacttcgaagaagccatgaaaaactttaaatcataccttattttgtcacc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||| |||||||| |||||||||| |
|
|
| T |
8695907 |
gctttgtttcaaagttatgctacaaggtatcgacaagaagc---agctagaacttccaagaagccatgaaaatcttt-aatcatac---tttttgtcacc |
8695815 |
T |
|
| Q |
120 |
ccttgtttgttcatgtatatgatacat-gttttttctttgggtggttttacatcgttatttat |
181 |
Q |
| |
|
| |||||||| |||||||||||||||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
8695814 |
ctttgtttgtccatgtatatgatacatggttttttctttgggtggttttgcaacgttatttat |
8695752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University