View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_8 (Length: 508)
Name: NF15317_low_8
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 40178925 - 40179399
Alignment:
| Q |
19 |
ctcaaagtttagcataatgtcagagatgtgtgaaccaaattcagagaaagctagtgaaattagtgctgagtctccaactacaccagttggagcacaacca |
118 |
Q |
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| T |
40178925 |
ctcaaagtttagcataatgtcagagatgtgtgaaccaaattcagagaaagctagtgaaattagtgctgagtctccaactacaccagttggagcacaacca |
40179024 |
T |
|
| Q |
119 |
gtagaaactgctgaacccaaaagcagtgaaagagtcaaagccacaagacacccaagatggactagacaagaaacacttgttctaattgaggcaaagaaag |
218 |
Q |
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| T |
40179025 |
gtagaaactgctgaacccaaaagcagtgaaagagtcaaagccacaagacacccaagatggactagacaagaaacacttgttctaattgaggcaaagaaag |
40179124 |
T |
|
| Q |
219 |
tgattgaaaatggagatcaggtttgcagatacagatcatcaacatcagggcttgttcaaaccgacccgaaatgggatatggtttcatcattgtgtcagca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40179125 |
tgattgaaaatggagatcaggtttgcagatacagatcatcaacatcagggcttgttcaaaccgacccgaaatgggatttggtttcatcattgtgtcagca |
40179224 |
T |
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| Q |
319 |
acatggtgtcaaaagaggagctgttcagtgcaggaaaaggtggggaaatcttctgactgatttcaggaagatcaagaaatgggagtcaaatataaaggat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40179225 |
acatggtgtcaaaagaggagctgttcagtgcaggaaaaggtggggaaatcttctgactgatttcaggaagatcaagaaatgggagtcaaatataaaggat |
40179324 |
T |
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| Q |
419 |
gagtctgagtctttttggataatgagaaatgatgtgaggaaagaaaacaaattgcctggtttctttgattctgtg |
493 |
Q |
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| T |
40179325 |
gagtctgagtctttttggataatgagaaatgatgtgaggaaagaaaacaaattgcctggtttctttgattctgtg |
40179399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 6226477 - 6226411
Alignment:
| Q |
22 |
aaagtttagcataatgtcagagatgtgtgaaccaaattcagagaaagctagtgaaattagtgctgag |
88 |
Q |
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|||| ||| |||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
6226477 |
aaagcttaacataatgtcagaaatgtgtgaaccaaattcagagaaagttggtgaaattagtgctgag |
6226411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 1786699 - 1786637
Alignment:
| Q |
22 |
aaagtttagcataatgtcagagatgtgtgaaccaaattcagagaaagctagtgaaattagtgctgag |
88 |
Q |
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|||||||| ||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||| |
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| T |
1786699 |
aaagtttaacataacgtcagagatgtgtggaccaatttcagagaa----agtgaaattagtgctgag |
1786637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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