View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15317_low_9 (Length: 506)
Name: NF15317_low_9
Description: NF15317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15317_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 34 - 493
Target Start/End: Complemental strand, 11710569 - 11710110
Alignment:
| Q |
34 |
ttcatgggtacggttgtccaaaagccctttgannnnnnnaagttttcctttccccatagttagctctagtcaaatcatgggaaagaaggaaaggattact |
133 |
Q |
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| T |
11710569 |
ttcatgggtatggttgtccaaaagccctttgatttttttaagttttcctttccccatagctagctctagtcaaatcatgggaaagaaggaaaggattact |
11710470 |
T |
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| Q |
134 |
atacttacttgtaaagggaatcctcgtatgatgtagacgattcttctttgttggcatctctttcagtctgaagtttctctagctgctgatcaatggttgc |
233 |
Q |
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| T |
11710469 |
atacttacttgtaaagggaatcctcgtatgatgtagacgattcttctttgttggcatctctttcagtctgaagtttctctagctgctgatcaatggttgc |
11710370 |
T |
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| Q |
234 |
taaaaacaaatgaggatgggtttgcaaaatttgttccaacagctgaccaactggtgactcaaattggagaggaggagaaggcacaaaattatcacttgaa |
333 |
Q |
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| T |
11710369 |
taaaaacaaatgaggatgggtttgcaaaatttgttccaacagctgaccaactggtgactcaaattggagaggaggagaaggcacaaaattatcacttgaa |
11710270 |
T |
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| Q |
334 |
tctgtagatgctctcacaactaaccctctacctcgaaaactgtagggttcattgtagtgtttggcattataagatggaggacaactctgcagagnnnnnn |
433 |
Q |
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| T |
11710269 |
tctgtagatgctctcacaactaaccctctacctcgaaaactgtagggttcattgtagtgtttggcattataagatggaggacaactctgcagagaaaaaa |
11710170 |
T |
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| Q |
434 |
ncacgtaacagctatttagttgctgaaaattcctccaacaaaatgacatacattttagta |
493 |
Q |
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| T |
11710169 |
acacgtaacagctatttagttgctgaaaattcctccaacaaaatgacatacattttagta |
11710110 |
T |
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