View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15318_high_5 (Length: 489)
Name: NF15318_high_5
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15318_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 460
Target Start/End: Complemental strand, 45202646 - 45202208
Alignment:
| Q |
13 |
tgaactggaatgaagttctttatttcatggtatgtatatgtctttaatctgcacattttaaaaaatagattgtttttagtcctcgttagtatttttgaag |
112 |
Q |
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| T |
45202646 |
tgaactggaatgaagttctttatttcatggtatgtatatgtctttaatctgcacattttaaaaaatagattgtttttagtcctcgttagtatttttgaag |
45202547 |
T |
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| Q |
113 |
aactaaaaagaataaatttttgtaataccaacaatggaaatacagtccccatagaactaagnnnnnnntgttatggaa---tagtcaacac--ccaaaca |
207 |
Q |
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| T |
45202546 |
aactaaaaagaataaatttttgtaataccaacaatggaaatacactccccatagaactaagaaaaaaatgttatggaagaatagtcaacacacccaaaca |
45202447 |
T |
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| Q |
208 |
agtagaatttcacaactcgttcaacaggattataacagacaaaacatacctaacagcattgataactaccaaatagaggccaagagaaaaaggctttaac |
307 |
Q |
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| T |
45202446 |
cat-------------tcgttcaacaggattataacagacaaaacatacctaacagcattgataactaccaaatagaggctaagagaaaa-ggctttaac |
45202361 |
T |
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| Q |
308 |
caaccacatcatatcatattatatgttatattatatggtaactcttgaagaataacagcatgcccacaaattcaaatgagaccaacagagccagacataa |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45202360 |
caaccacatcatatcatattatatgttatattatatggtaactcttgaagaataaaagcatgcccacaaattcaaatgagaccaacagagccagacataa |
45202261 |
T |
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| Q |
408 |
gcataacattaatcatttattacccaattgagaaatcaaacaaataacacata |
460 |
Q |
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| T |
45202260 |
gcataacattaatcatttattacccaattgagaaatcaaacaaataacacata |
45202208 |
T |
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