View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15318_low_1 (Length: 933)
Name: NF15318_low_1
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15318_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 29930959 - 29931291
Alignment:
| Q |
13 |
gagaagaaaaaataaaccaagagaggatatcactgagagattctggatgattccttgttgaatcatgcctgaagattaaggtttaaaccctcaaattcag |
112 |
Q |
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| T |
29930959 |
gagaagaaaaaataaaccaagagaggatatcactgagagattctggatgattccttgttgaatcatgcctgaagattaaggtttaaaccctcaaattcag |
29931058 |
T |
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| Q |
113 |
tgttttttgcagtaggatgctacctcagagatgtaggagcacattgctctgaatttctttaacaatcaattgtgttcactcctctttctccttcaagttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29931059 |
tgttttttgcagtaggatgctacctcagagatgtaggagcacattgctctgaatttctttaacaatcaattgtgttgactcctctttctccttcaagttt |
29931158 |
T |
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| Q |
213 |
atttatagatcttgcatcatcaaattctggtttcattcctttgtttccacaagcatttgaaattgtgtgttgtctaatttttgttcactgattctaaaat |
312 |
Q |
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| T |
29931159 |
atttatagatcttgcatcatcaaattctggtttcattcctttgtttccacaagcatttgaaattgtgtgttgtctaatttttgttcactgattctaaaat |
29931258 |
T |
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| Q |
313 |
caaaagcacttttgtacaatttgctgcattatc |
345 |
Q |
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| T |
29931259 |
caaaagcatttttgtacaatttgctgcattatc |
29931291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 348 - 464
Target Start/End: Original strand, 29932716 - 29932832
Alignment:
| Q |
348 |
tattatgtggaaattcataagttcaattttctgatttaaggtttctaatgttaggccaagggtgatatcagatatgatgatttccagaaaaatgagcagt |
447 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29932716 |
tattatgtggaaattcataagtttaattttctgatttaaggtttctaatgttaggccaagggtgatatcagatatgatgatttccagaaaaatgagcagt |
29932815 |
T |
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| Q |
448 |
tgaatccgatgacgaaa |
464 |
Q |
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| T |
29932816 |
tgaatccgatgacgaaa |
29932832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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