View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15318_low_11 (Length: 481)

Name: NF15318_low_11
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15318_low_11
NF15318_low_11
[»] chr2 (13 HSPs)
chr2 (1-461)||(1862676-1863141)
chr2 (1-46)||(16564420-16564465)
chr2 (1-50)||(38935384-38935433)
chr2 (1-49)||(7932784-7932832)
chr2 (4-50)||(944811-944857)
chr2 (5-50)||(10459306-10459351)
chr2 (1-50)||(24037605-24037654)
chr2 (5-50)||(43398863-43398908)
chr2 (8-48)||(33615293-33615333)
chr2 (2-50)||(40823551-40823599)
chr2 (6-41)||(11386358-11386393)
chr2 (5-50)||(19924344-19924389)
chr2 (8-48)||(25089943-25089983)
[»] chr1 (4 HSPs)
chr1 (1-49)||(5056315-5056363)
chr1 (1-50)||(3694008-3694057)
chr1 (1-50)||(37918935-37918984)
chr1 (5-50)||(31784775-31784820)
[»] chr8 (4 HSPs)
chr8 (5-50)||(13210004-13210049)
chr8 (1-48)||(9548070-9548117)
chr8 (6-50)||(33557801-33557845)
chr8 (46-87)||(29005668-29005709)
[»] chr3 (5 HSPs)
chr3 (8-50)||(18364208-18364250)
chr3 (1-50)||(47783118-47783167)
chr3 (1-50)||(26104258-26104307)
chr3 (4-49)||(29637457-29637502)
chr3 (10-50)||(32221500-32221540)
[»] scaffold0067 (1 HSPs)
scaffold0067 (1-50)||(35980-36029)
[»] chr6 (3 HSPs)
chr6 (1-50)||(30531218-30531267)
chr6 (5-50)||(31323854-31323899)
chr6 (11-48)||(33822330-33822367)
[»] chr5 (7 HSPs)
chr5 (1-50)||(30293416-30293465)
chr5 (11-50)||(17858208-17858247)
chr5 (6-48)||(12619661-12619703)
chr5 (1-50)||(9530953-9531002)
chr5 (1-50)||(17555965-17556014)
chr5 (5-50)||(38958101-38958146)
chr5 (8-48)||(33498403-33498443)
[»] chr4 (3 HSPs)
chr4 (1-50)||(5496872-5496921)
chr4 (6-50)||(24980651-24980695)
chr4 (1-50)||(54235243-54235292)
[»] scaffold0034 (1 HSPs)
scaffold0034 (5-42)||(94994-95031)
[»] scaffold0009 (1 HSPs)
scaffold0009 (5-50)||(51246-51291)
[»] chr7 (3 HSPs)
chr7 (1-50)||(3769774-3769823)
chr7 (1-50)||(14773511-14773560)
chr7 (1-50)||(15223963-15224012)


Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 1862676 - 1863141
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaatacacata--attttaatcgaaatgtaaatttcatacaaaaatattgtttatag 98  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  1862676 atgagtcaacataagttgatgtatttgacacaaattttgaatcaaatacacatataattttaatcgaaatgtaaatttcatacaaaaatattgtttatag 1862775  T
Q  99 tttgcacacgttatacaataataagaacggatagatgtgtcga---tatgaacgcaagttttcataattttaagggataatctatttaataaatatgtac 195  Q
    |||||||||||||||||||||||||||||||||||||||| ||    | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1862776 tttgcacacgttatacaataataagaacggatagatgtgttgaatgaacgaacgcaagttttcataattttaagggataatctatttaataaatatgtac 1862875  T
Q  196 caggaaatattctacgcttccccccaccctctatagactgacctagttggccgaggctgggcataacctcagtaaactctggtaataatgttaaaactga 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1862876 caggaaatattctacgcttccccccaccctctatagactgacctagttggccgaggctgggcataacctcagtaaactctggtaataatgttaaaactga 1862975  T
Q  296 atgattcattgatccgtcatggttatctggtcactggtttgttggttgaaccactaagttacacattgaactgcatgtctgaactgaattaaatcttatg 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1862976 atgattcattgatccgtcatggttatctggtcactggtttgttggttgaaccactaagttacacattgaactgcatgtctgaactgaattaaatcttatg 1863075  T
Q  396 tctcggatctcgtctttataannnnnnnatatatgtatcaaattagattgaactggatgactccat 461  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  1863076 tctcggatctcgtctttataatttttttatatatgtatcaaattagattgaactggatgactccat 1863141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16564465 - 16564420
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaa 46  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  16564465 atgagtcaacataagttgatgtatttggtacaaattttgaaccaaa 16564420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38935384 - 38935433
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  38935384 atgagtcaacataagttgatgtatttgatacagattttgaacaaaataca 38935433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7932832 - 7932784
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaatac 49  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  7932832 atgagtcaacataagttgatgtatctgatataaattttgaaccaaatac 7932784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 944857 - 944811
Alignment:
Q  4 agtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||    
T  944857 agtcaacataagttgatgtatttggtacaaattttgaactaaataca 944811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 10459351 - 10459306
Alignment:
Q  5 gtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||||||||||||||| || ||| |||||||||||||||||||||    
T  10459351 gtcaacataagttgatgcatctgatacaaattttgaaccaaataca 10459306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24037605 - 24037654
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||||||||||||| ||||||  ||||||||||||| |||||||    
T  24037605 atgagtcaacataagttgatatatttggtacaaattttgaacaaaataca 24037654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 43398863 - 43398908
Alignment:
Q  5 gtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||| |||||||||||||||||  |||||||||||||||||||||    
T  43398863 gtcaatataagttgatgtatttggtacaaattttgaaccaaataca 43398908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 33615333 - 33615293
Alignment:
Q  8 aacataagttgatgtatttgacacaaattttgaaccaaata 48  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  33615333 aacataagttgatgtatttgatacaaattttgaatcaaata 33615293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 40823551 - 40823599
Alignment:
Q  2 tgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||||||||||| ||||||||||||| | ||||||| |||||||||||    
T  40823551 tgagtcaacataatttgatgtatttgatataaattttaaaccaaataca 40823599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 11386393 - 11386358
Alignment:
Q  6 tcaacataagttgatgtatttgacacaaattttgaa 41  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11386393 tcaacataagttgatgtatttgatacaaattttgaa 11386358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 19924389 - 19924344
Alignment:
Q  5 gtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||| ||||||||||||||||  ||||||||||||||| |||||    
T  19924389 gtcaacgtaagttgatgtatttggtacaaattttgaaccatataca 19924344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 25089943 - 25089983
Alignment:
Q  8 aacataagttgatgtatttgacacaaattttgaaccaaata 48  Q
    ||||||||||| ||||||||| |||||||||||| ||||||    
T  25089943 aacataagttgttgtatttgatacaaattttgaagcaaata 25089983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5056315 - 5056363
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaatac 49  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||    
T  5056315 atgagtcaacataagttgatgtatttgatacaaattttgaatcaaatac 5056363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3694008 - 3694057
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  3694008 atgagtcaacataaattgatgtatttaatacaaattttgaatcaaataca 3694057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 37918935 - 37918984
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||| ||||||||||||||||||||||| | ||||||| |||||||||||    
T  37918935 atgaatcaacataagttgatgtatttgatataaattttaaaccaaataca 37918984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 31784820 - 31784775
Alignment:
Q  5 gtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||||||||||||| | | ||||||||||||| |||||||    
T  31784820 gtcaacataagttgatgtatctaatacaaattttgaacaaaataca 31784775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 13210049 - 13210004
Alignment:
Q  5 gtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  13210049 gtcaacataagttgatgtatctgatacaaattttgaaccaaataca 13210004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9548070 - 9548117
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaata 48  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||    
T  9548070 atgagtcaacataagttgatgtatttagtacaaattttgaaccaaata 9548117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 33557801 - 33557845
Alignment:
Q  6 tcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||    
T  33557801 tcaacataagtttatgtatttgatacaaattttgaactaaataca 33557845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 29005668 - 29005709
Alignment:
Q  46 atacacataattttaatcgaaatgtaaatttcatacaaaaat 87  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||    
T  29005668 atacatataattttaatcgaaatctaaatttcataaaaaaat 29005709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 18364250 - 18364208
Alignment:
Q  8 aacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
T  18364250 aacataagttgatgtatctgacacaaattttgaacaaaataca 18364208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 47783167 - 47783118
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||||||||  ||||||| ||| |||||||||||||||||||||    
T  47783167 atgagtcaacataagccgatgtatctgatacaaattttgaaccaaataca 47783118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 26104307 - 26104258
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||||||| ||||| | ||||| ||||||||||||| |||||||    
T  26104307 atgagtcaacataaattgatttgtttgatacaaattttgaactaaataca 26104258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 29637457 - 29637502
Alignment:
Q  4 agtcaacataagttgatgtatttgacacaaattttgaaccaaatac 49  Q
    ||||||||||| || || ||||||| ||||||||||||||||||||    
T  29637457 agtcaacataaattaatatatttgatacaaattttgaaccaaatac 29637502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 32221500 - 32221540
Alignment:
Q  10 cataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||| ||||||||||||  |||||||||||||||||||||    
T  32221500 cataaattgatgtatttggtacaaattttgaaccaaataca 32221540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 36029 - 35980
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||||||| |||| ||||||||||||| |||||||||| ||||||||||    
T  36029 atgagtcaatataaattgatgtatttgatacaaattttgtaccaaataca 35980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30531267 - 30531218
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||| ||||||||||||||||||||||  ||||| |||||||||||||||    
T  30531267 atgactcaacataagttgatgtatttggtacaaactttgaaccaaataca 30531218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 31323899 - 31323854
Alignment:
Q  5 gtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||||||||||||| ||  ||||||||||||| |||||||    
T  31323899 gtcaacataagttgatgtatctggtacaaattttgaacaaaataca 31323854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 33822367 - 33822330
Alignment:
Q  11 ataagttgatgtatttgacacaaattttgaaccaaata 48  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  33822367 ataagttgatgtatttgatacaaattttgaactaaata 33822330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30293465 - 30293416
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||||||||||| |||||||||||||| | |||||||||| ||||||||    
T  30293465 atgagtcaacatatgttgatgtatttgatataaattttgaatcaaataca 30293416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 17858247 - 17858208
Alignment:
Q  11 ataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  17858247 ataagttgatgtatctgatacaaattttgaaccaaataca 17858208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 12619703 - 12619661
Alignment:
Q  6 tcaacataagttgatgtatttgacacaaattttgaaccaaata 48  Q
    ||||||||||||||||||||||| | |||||||||| ||||||    
T  12619703 tcaacataagttgatgtatttgatataaattttgaatcaaata 12619661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9531002 - 9530953
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||||||| |||| ||| ||||||||| | |||||||||||||||||||    
T  9531002 atgagtcaatataaattggtgtatttgatataaattttgaaccaaataca 9530953  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 17555965 - 17556014
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||| ||||||||| ||||||| | ||||||||||||| |||||    
T  17555965 atgagtcaacgtaagttgatatatttgatataaattttgaaccacataca 17556014  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 38958146 - 38958101
Alignment:
Q  5 gtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||| ||||||||||||||  ||||| |||||||||||||||    
T  38958146 gtcaacatgagttgatgtatttggtacaaaatttgaaccaaataca 38958101  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 33498443 - 33498403
Alignment:
Q  8 aacataagttgatgtatttgacacaaattttgaaccaaata 48  Q
    |||||||||||||||||||   |||||||||||||||||||    
T  33498443 aacataagttgatgtattttgtacaaattttgaaccaaata 33498403  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 5496872 - 5496921
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||||||| |||||||||| ||||||  |||||||||||||||||||||    
T  5496872 atgagtcaatataagttgatttatttggtacaaattttgaaccaaataca 5496921  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 24980651 - 24980695
Alignment:
Q  6 tcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||||||||||||||||| |||||||||||||| || |||||||    
T  24980651 tcaacataagttgatgtatctgacacaaattttgtacaaaataca 24980695  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 54235243 - 54235292
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||||||| |||| |||||||||||   |||||||||||||||||||||    
T  54235243 atgagtcaatataaattgatgtatttagtacaaattttgaaccaaataca 54235292  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 95031 - 94994
Alignment:
Q  5 gtcaacataagttgatgtatttgacacaaattttgaac 42  Q
    |||||||||||||||||||||||  |||||||||||||    
T  95031 gtcaacataagttgatgtatttggtacaaattttgaac 94994  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 51246 - 51291
Alignment:
Q  5 gtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||||||||||||||||  | ||||||||||| |||||||    
T  51246 gtcaacataagttgatgtatttggtataaattttgaactaaataca 51291  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3769774 - 3769823
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    ||||||||||| |||||||||||||| | ||||||||| ||| |||||||    
T  3769774 atgagtcaacacaagttgatgtatttaatacaaattttaaactaaataca 3769823  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14773560 - 14773511
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||| ||||||||||||| ||| | ||||||||||||| |||||    
T  14773560 atgagtcaacgtaagttgatgtatctgatataaattttgaaccacataca 14773511  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15224012 - 15223963
Alignment:
Q  1 atgagtcaacataagttgatgtatttgacacaaattttgaaccaaataca 50  Q
    |||||||||| ||||||||||||| ||| | ||||||||||||| |||||    
T  15224012 atgagtcaacgtaagttgatgtatctgatataaattttgaaccacataca 15223963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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