View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15318_low_13 (Length: 411)
Name: NF15318_low_13
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15318_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 38468261 - 38467859
Alignment:
| Q |
1 |
cataatctgtgttaaaaacattgtaggttgcacacttttaaaggagacacatgaaaggaacaatttttaaatcaactaaatgccaagatttcctcaacag |
100 |
Q |
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| T |
38468261 |
cataatctgtgttaaaaacattgtaggttgcacacttttaaaggagacacacgaaaggaacaatttttaaatcaactaaatgccaagatttcctcaacag |
38468162 |
T |
|
| Q |
101 |
atgatggtttgttcaaagttgtgcataagatcaatgaacttgcttacatggtaaaattttaagcacctataaagtcagtagtacattctacaatgctgtc |
200 |
Q |
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| T |
38468161 |
atgatggtttgttcaaagttgtgcataagatcaatgaacttgcttacatggtaaaattttaagcacctataaagtcagtagtacattctacaatgctgtc |
38468062 |
T |
|
| Q |
201 |
gatcttttaccgtactttgacaatgaatcataacttgatttgaggatgagtcctaatcaaataaaggagaatgatatggatcaaaatctagtccaggagt |
300 |
Q |
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| T |
38468061 |
gatcttttactgtactttgacaatgaatcataacttgatttgaggatgagtcctaatcaaataaaggagaatgatatggatcaaaatctagtccaggagt |
38467962 |
T |
|
| Q |
301 |
tcatcccgaagacccaatacatgaaccgaccattatgtaaggaaaaccaaggaattgcagatggttcaacatccactacctactttaatgtcaatagtat |
400 |
Q |
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| T |
38467961 |
tcatcccgaagacccaatacatgaaccgaccattatgtaaggaaaaccaaggaattgcagatggttcaacatccactacctactttaatgtcaataatat |
38467862 |
T |
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| Q |
401 |
aat |
403 |
Q |
| |
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| T |
38467861 |
aat |
38467859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 53 - 303
Target Start/End: Complemental strand, 38468828 - 38468584
Alignment:
| Q |
53 |
gaaaggaacaatttttaaatcaactaaatgccaagatttcctcaacagatgatggtttgttcaaagttgtgcataagatcaatgaacttgcttacatggt |
152 |
Q |
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|||| ||||||||||| ||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||| | || | ||||| ||| |
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| T |
38468828 |
gaaaagaacaattttttaatcaaccaaatgccaatgattccttaacagatgatggtttgttcagagttgtgcataagac----ggacatatttacaaggt |
38468733 |
T |
|
| Q |
153 |
aaaattttaagcacctataaagtcagtagtacattctacaatgctgtcgatcttttaccgtactttgacaatgaatcataacttgatttgaggatgagtc |
252 |
Q |
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|||| |||||||||||||||||| | |||| || || || ||||||| |||||| ||||||||||||||| |||| ||||| |||||| |||||| |
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| T |
38468732 |
aaaactttaagcacctataaagt---tgctacaaccttcagtgttgtcgattgtttaccatactttgacaatgaagcatagcttgacttgaggttgagtc |
38468636 |
T |
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| Q |
253 |
ctaatcaaataaaggagaatgatatggatcaaa-atctagtccaggagttca |
303 |
Q |
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| T |
38468635 |
ctaatcgagtaaggcagaatgatatggatcaaagatcaagtccaggagttca |
38468584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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