View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15318_low_14 (Length: 347)
Name: NF15318_low_14
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15318_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 5727858 - 5728186
Alignment:
| Q |
1 |
atcaaattcccacaatggctacttcttctcatcccttaacaaatcttactcctacaatgatgatcgatgtaatgtcttaggtatacatttaagtacttaa |
100 |
Q |
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| T |
5727858 |
atcaaattaccacaatggctacttcttctcatcccttaacaaatcttactcctacaatgatgatcgatgtaatgtcttaggtatacatttaagtacttaa |
5727957 |
T |
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| Q |
101 |
ttttgttaggaaattgtttaatataggataatagtacaattttactaaagatacaattagattattattccatttttcaaaagatgggttgagtttctat |
200 |
Q |
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| T |
5727958 |
ttttgttaggaaattgtttaatataggataatagtacaattttactaaagatacaattagattattattccatttttcaaaagatgggttgagtttctat |
5728057 |
T |
|
| Q |
201 |
ctggtctgtgtaaaaaatcaatgagatgacactgtagcaacatagcaccggaaaaaccccaataaagggccttcaagcaacgaatagttccactatcttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5728058 |
ctggtctgtgtaaaaaatcaatgagatgacactgtagcaacatagcaccggaaaaaccccaataaagggccttcaagcaacgaatggttccactatcttt |
5728157 |
T |
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| Q |
301 |
gccttgtccttattattggccatgattcc |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5728158 |
gccttgtccttattattggccatgattcc |
5728186 |
T |
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