View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15318_low_16 (Length: 326)
Name: NF15318_low_16
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15318_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 91 - 308
Target Start/End: Original strand, 4094614 - 4094838
Alignment:
| Q |
91 |
gaacgagggtgatattatatttccacaacgttcaaaagatgataataaaacagaactagga----tataacacaagcaaa------tttttcttagacca |
180 |
Q |
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| T |
4094614 |
gaacgagggttatattatatttcaacaacgttcaaaagat---aataaaacagaactagtaagtatataacacaagcacaagcacatttttattagacca |
4094710 |
T |
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| Q |
181 |
agcatcatcatcattttccaaatggcttctctaaacaaacacatcaaaatccatgaacaatgcaaagtttctcctagttcttcttcaacccaactatctc |
280 |
Q |
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| T |
4094711 |
atcatcatcatcattttccaaatggcttctctaaacaaacacatcaaaatccatgaacaatgcaaagtttctcctagttcttcttcaacccaactatctc |
4094810 |
T |
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| Q |
281 |
tccctctcacattttttgactatatttg |
308 |
Q |
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| T |
4094811 |
tccctctcacattttttgactatatttg |
4094838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 4102246 - 4102320
Alignment:
| Q |
153 |
ataacacaagcaaatttttcttagaccaagcatcatcatcattttccaaatggcttctctaaacaaacacatcaaaatcca |
233 |
Q |
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||||||||||||||| ||||||||||||| ||||||| ||||||||| |||||| |||||| ||||||||||||| |
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| T |
4102246 |
ataacacaagcaaatgtttcttagaccaaacatcatc------ttccaaatgacttctccaaacaactacatcaaaatcca |
4102320 |
T |
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