View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15318_low_17 (Length: 311)
Name: NF15318_low_17
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15318_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 38468291 - 38468585
Alignment:
| Q |
1 |
taagtaagagt--attgtgaatattcatgtttctcatatgaatgaatatcgatgattaaaatctcaatttgctcaatgaaattgtgagggtgtgtcaagt |
98 |
Q |
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| T |
38468291 |
taagtaagagtctattgtgaatattcatgtttctcatatgaatgaatatcaatgattaaaatctcaatttgctcaatgaaattgtgagggtgtgtcaagt |
38468390 |
T |
|
| Q |
99 |
tagtctaattcacttaacatggcatgcatgcacgcacgtgtacaacagtgtatttaacgtgccacattagcgcccctaactcttttaactaacattgtgc |
198 |
Q |
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| T |
38468391 |
tagtctaattcacttaacatggcatgcatgcacgcacgtgtacagcagtgtatttaacgtgccacattagcgcccctaactcttttaactaacattgtgc |
38468490 |
T |
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| Q |
199 |
aaaaatggtggttacaattgtatagttggcatttaagtagtaaatgttgaaccatctacggttcctaggtttcccttacagaatggtcacttctg |
293 |
Q |
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| T |
38468491 |
aaaaatggtggttacaattgtatagttggcatttaagtagtaaatgttgaaccatctacggttcctcggtttgccttacagaatggtcacttctg |
38468585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 38467534 - 38467648
Alignment:
| Q |
1 |
taagtaagagt--attgtgaatattcatgtttctcatatgaatgaatatcgatgattaaaatctcaatttgctcaatgaaattgtgagggtgtgtcaagt |
98 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
38467534 |
taagtaagagtctattgtgaatattcatgtctctcatatgaatgaatatcaatgattaaaatctcactttgctcaatgaaattgtaagggtgtgtcaagt |
38467633 |
T |
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| Q |
99 |
tagtctaattcactt |
113 |
Q |
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| T |
38467634 |
tagtctaattcactt |
38467648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 38467807 - 38467934
Alignment:
| Q |
163 |
cattagcgcccctaactcttttaactaacattgtgcaaaaatggtggttacaattgtatagttggcatt----taagtagtaaatgttgaaccatctacg |
258 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||| ||| |||| || ||||| |||||||||||||| | |
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| T |
38467807 |
cattagcgcccctaactcttttaactaacatggtgcaaaattggtggttagaattatattattgacattaaagtaggtagtggatgttgaaccatctgca |
38467906 |
T |
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| Q |
259 |
gttcctaggtttcccttacagaatggtc |
286 |
Q |
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| T |
38467907 |
attccttggttttccttacataatggtc |
38467934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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