View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15318_low_19 (Length: 294)
Name: NF15318_low_19
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15318_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 48 - 279
Target Start/End: Original strand, 35428819 - 35429050
Alignment:
| Q |
48 |
atatatatatcaaaatttaatattttcctgattgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatt |
147 |
Q |
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| T |
35428819 |
atatatatttcaaaaattaatactttcctgatcgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatt |
35428918 |
T |
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| Q |
148 |
tggacaaaacattattagggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaaccatcaccaaaaggcaaattac |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35428919 |
tggacaaaacattattagggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaatcatcaccaaaaggcaaattac |
35429018 |
T |
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| Q |
248 |
ttttctacttctacctcatacttacttcaaag |
279 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
35429019 |
ttttctacttctacctcatacttacttcaaag |
35429050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 48 - 249
Target Start/End: Original strand, 35419686 - 35419886
Alignment:
| Q |
48 |
atatatatatcaaaatttaatattttcctgattgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatt |
147 |
Q |
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|||||||| |||| | |||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35419686 |
atatatatttcaataattaatacttccctgatagaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatt |
35419785 |
T |
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| Q |
148 |
tggacaaaacattattagggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaaccatcaccaaaaggcaaattac |
247 |
Q |
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|||||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| | ||||||||||||||| |
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| T |
35419786 |
tggacaaaacattattagggttat-aacctacttaaactcttccaaaattttgcctataaatgcattgtatagcaaaatcatgagcaaaaggcaaattac |
35419884 |
T |
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| Q |
248 |
tt |
249 |
Q |
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|| |
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| T |
35419885 |
tt |
35419886 |
T |
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Back To:
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