View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15318_low_2 (Length: 862)

Name: NF15318_low_2
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15318_low_2
NF15318_low_2
[»] chr3 (9 HSPs)
chr3 (164-847)||(5306839-5307537)
chr3 (19-86)||(5307616-5307683)
chr3 (19-63)||(5307684-5307728)
chr3 (259-331)||(18364204-18364275)
chr3 (261-315)||(15282643-15282697)
chr3 (261-331)||(32221474-32221544)
chr3 (258-299)||(30818031-30818072)
chr3 (263-319)||(37330975-37331031)
chr3 (261-331)||(31280191-31280261)
[»] chr5 (6 HSPs)
chr5 (670-855)||(29144830-29145015)
chr5 (670-855)||(29226958-29227143)
chr5 (262-319)||(25467111-25467168)
chr5 (262-329)||(12619657-12619724)
chr5 (43-94)||(32017264-32017317)
chr5 (261-351)||(33669931-33670023)
[»] chr4 (5 HSPs)
chr4 (261-351)||(30848594-30848688)
chr4 (263-332)||(24980631-24980700)
chr4 (261-332)||(4423184-4423255)
chr4 (262-331)||(54235227-54235296)
chr4 (63-93)||(51355197-51355227)
[»] chr1 (2 HSPs)
chr1 (261-325)||(31784777-31784841)
chr1 (259-332)||(3693989-3694062)
[»] chr7 (1 HSPs)
chr7 (261-331)||(18731994-18732064)
[»] chr6 (4 HSPs)
chr6 (261-331)||(31323850-31323920)
chr6 (262-331)||(33822324-33822393)
chr6 (60-94)||(5495319-5495353)
chr6 (259-301)||(14222859-14222901)
[»] chr2 (6 HSPs)
chr2 (261-331)||(16180439-16180509)
chr2 (261-351)||(25089919-25090010)
chr2 (261-331)||(10459302-10459372)
chr2 (262-332)||(11386344-11386414)
chr2 (261-331)||(29291068-29291138)
chr2 (261-331)||(38935367-38935437)
[»] scaffold0067 (1 HSPs)
scaffold0067 (261-331)||(35976-36046)
[»] chr8 (1 HSPs)
chr8 (274-331)||(8777805-8777862)


Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 164 - 847
Target Start/End: Complemental strand, 5307537 - 5306839
Alignment:
Q  164 attattaaacatatcaatgattaaaattgtgaa-----atatgtgaaatagttgattgcgacatgtacttaagaatgaaagtagtagtatatactcttta 258  Q
    ||||||||||||||||||||||||||||||| |     |||||||||||||||||||  ||| |||||||||||||||||  |||||||||||||||||     
T  5307537 attattaaacatatcaatgattaaaattgtgcatttatatatgtgaaatagttgattttgacgtgtacttaagaatgaaataagtagtatatactctttc 5307438  T
Q  259 t--tccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaatattttt--accaatttttgctact 354  Q
    |  ||||||||||||||||||||||||| |||||  |||||||||| |||||||||||| ||| ||||  |||||| ||| |  ||||||||||||||||    
T  5307437 tgttccaaaatgtaaacaaaaatggatctacatacgttgatgtatctaatacaaattttaaacgaaatccattaatttttattgaccaatttttgctact 5307338  T
Q  355 ggtagtcaaagaaaacaacnnnnnnnnnagaggaagtcaaaatataacttataaaaataaaatggaatatttttcagcatttactcctactattgacttt 454  Q
     |||||||||||||||||          |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  5307337 cgtagtcaaagaaaacaa--ttttttttagaggaagtcaaaatacaacttataaaaagaaaatggaatatttttcagcatttattcatactattgacttt 5307240  T
Q  455 ttgttttactatctattcaaat-ccgaggcaaattagaccacca---caactaaattttacattttcctttcccctaccctctttcataagtattttttg 550  Q
    ||||||||||| |||||||||| ||||||||||||| |||||||   ||||||||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  5307239 ttgttttactacctattcaaataccgaggcaaattacaccaccacctcaactaaatcttatattttcctttccccta-cctctttcataagtattttttg 5307141  T
Q  551 tctcttttatttaacaccaattgtatatgatttgagcacagcacatg---tttttgtcactctatttaacaccaattgtttgtttgttcacatatata-n 646  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||| |      
T  5307140 tctctttgatttaacaccaattgtatatgagttgagcacagcacatgttatttttgtcactctatttaacaccaattgtttgtttgttctcatatacatt 5307041  T
Q  647 nnnnnncttt-gacaaatatgagtaacacagagaaaactcaaagtatgaaagaatggtttatctcttcccaagctcttcttagcatgttattagtgcaaa 745  Q
          |||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5307040 ttttttctttagacaaatatgagtaacacagagagaactcaaagtatgaaagaatggttcatctcttcccaagctcttcttagcatgttattagtgcaaa 5306941  T
Q  746 tatttggaactgggatacaacttttatcaagggtcatcttggttcaaggaactttcatttttgcactcattgcatatcgacacattgttgctgctgtctg 845  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||||||||||||| ||    
T  5306940 tatttggaactgggatacaacttttatcaagggtcatcttggttcagggcactttcatttttgcactcaatgcatatcgacaaattgttgctgctgtttg 5306841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 5307683 - 5307616
Alignment:
Q  19 gcaattaaacaaagcacacttttgacataaattactttgattgttttttagctaatatataaatacaa 86  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5307683 gcaattaatcaatgcacacttttgacataaattactttgattgttttttagctaatatataaatacaa 5307616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 5307728 - 5307684
Alignment:
Q  19 gcaattaaacaaagcacacttttgacataaattactttgattgtt 63  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  5307728 gcaattaaacaatgcacacttttgacataaattactttgattgtt 5307684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 18364275 - 18364204
Alignment:
Q  259 ttccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    ||||||||||||| ||||||||| | ||||||| ||||||||||  | ||||||||||||||||||| |||||    
T  18364275 ttccaaaatgtaagcaaaaatggtt-aacataagttgatgtatctgacacaaattttgaacaaaatacattaa 18364204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 15282643 - 15282697
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaatttt 315  Q
    ||||||| ||||||||||||||||||||||| |||||| |||  |||||||||||    
T  15282643 ccaaaatataaacaaaaatggatcaacataagttgatgaatctgatacaaatttt 15282697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 32221474 - 32221544
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    ||||||||||| ||||||| ||||| |||||||||||||||    |||||||||||||| ||||| |||||    
T  32221474 ccaaaatgtaagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaa 32221544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 30818072 - 30818031
Alignment:
Q  258 attccaaaatgtaaacaaaaatggatcaacataaattgatgt 299  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  30818072 attccaaaatataaacaaaaatggatcaacataagttgatgt 30818031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 37331031 - 37330975
Alignment:
Q  263 aaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaac 319  Q
    ||||||||| ||||||||| | |||||||||||| ||||| | ||||||||||||||    
T  37331031 aaaatgtaagcaaaaatgggttaacataaattgacgtatctagtacaaattttgaac 37330975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 31280261 - 31280191
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    |||||| ||||  ||||||||||||||||||||| ||||||    |||||||||||||| ||||| |||||    
T  31280261 ccaaaaggtaaggaaaaatggatcaacataaattaatgtatatggtacaaattttgaaccaaatacattaa 31280191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 670 - 855
Target Start/End: Original strand, 29144830 - 29145015
Alignment:
Q  670 aacacagagaaaactcaaagtatgaaagaatggtttatctcttcccaagctcttcttagcatgttattagtgcaaatatttggaactgggatacaacttt 769  Q
    |||||||||| || | |||||||||| |||||||| |  || || ||||| |||||||| |||||||||||||||||||||| ||||||||| ||||||     
T  29144830 aacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttattagtgcaaatatttgcaactgggatgcaacttc 29144929  T
Q  770 tatcaagggtcatcttggttcaaggaactttcatttttgcactcattgcatatcgacacattgttgctgctgtctgtgctgctcct 855  Q
    ||||||| ||||| ||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||| | |||| |||||||    
T  29144930 tatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgctgctatttgtgttgctcct 29145015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 670 - 855
Target Start/End: Complemental strand, 29227143 - 29226958
Alignment:
Q  670 aacacagagaaaactcaaagtatgaaagaatggtttatctcttcccaagctcttcttagcatgttattagtgcaaatatttggaactgggatacaacttt 769  Q
    |||||||||| || | |||||||||| |||||||| |  || || ||||| |||||||| |||||||||||||||||||||| ||||||||| ||||||     
T  29227143 aacacagagagaattgaaagtatgaaggaatggttcaaatcatcacaagcacttcttagtatgttattagtgcaaatatttgcaactgggatgcaacttc 29227044  T
Q  770 tatcaagggtcatcttggttcaaggaactttcatttttgcactcattgcatatcgacacattgttgctgctgtctgtgctgctcct 855  Q
    ||||||| ||||| ||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||| | |||| |||||||    
T  29227043 tatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgttgctgctatttgtgttgctcct 29226958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 25467111 - 25467168
Alignment:
Q  262 caaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaac 319  Q
    |||||||||| ||||||||||| ||||||| ||||||||||  ||| |||||||||||    
T  25467111 caaaatgtaagcaaaaatggattaacataagttgatgtatccgatataaattttgaac 25467168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 12619724 - 12619657
Alignment:
Q  262 caaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatatt 329  Q
    |||||| ||| ||||||||||||||||||| |||||||||   ||| ||||||||||  |||||||||    
T  12619724 caaaatataagcaaaaatggatcaacataagttgatgtatttgatataaattttgaatcaaatatatt 12619657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 32017264 - 32017317
Alignment:
Q  43 acataaattactttgat--tgttttttagctaatatataaatacaaatgttagc 94  Q
    |||||| ||||||||||  | ||||||| |||||||||||||||||||||||||    
T  32017264 acataacttactttgatcatattttttaactaatatataaatacaaatgttagc 32017317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 351
Target Start/End: Original strand, 33669931 - 33670023
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa--tatttttaccaatttttgct 351  Q
    ||||||||||| ||||||||| ||||||||| ||  ||||||   |||||||||| ||| ||||| |||||  | |||| |||||||||||||    
T  33669931 ccaaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttttttgaccaatttttgct 33670023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 261 - 351
Target Start/End: Original strand, 30848594 - 30848688
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaa--tacaaattttgaacaaaatatattaatatt--tttaccaatttttgct 351  Q
    ||||||||||| ||||||||||||||||||| |||||||||| ||  |||||||||||||||||||| |||||| ||  || |||||||||||||    
T  30848594 ccaaaatgtaagcaaaaatggatcaacataagttgatgtatctaatgtacaaattttgaacaaaatacattaatttttgttgaccaatttttgct 30848688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 24980631 - 24980700
Alignment:
Q  263 aaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaat 332  Q
    |||||||||  |||||||||||||||||| ||||||||||  | |||||||||| |||||||| ||||||    
T  24980631 aaaatgtaagtaaaaatggatcaacataagttgatgtatctgacacaaattttgtacaaaatacattaat 24980700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 4423255 - 4423184
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaat 332  Q
    ||||||||||| |||||||||||||| |||| |||||||||    |||||||||||||  ||||||||||||    
T  4423255 ccaaaatgtaagcaaaaatggatcaatataagttgatgtatttggtacaaattttgaatcaaatatattaat 4423184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 331
Target Start/End: Original strand, 54235227 - 54235296
Alignment:
Q  262 caaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    |||||||||| ||||||||  |||| ||||||||||||||  | |||||||||||||| ||||| |||||    
T  54235227 caaaatgtaagcaaaaatgagtcaatataaattgatgtatttagtacaaattttgaaccaaatacattaa 54235296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 93
Target Start/End: Complemental strand, 51355227 - 51355197
Alignment:
Q  63 tttttagctaatatataaatacaaatgttag 93  Q
    |||||||||||||||||||||||||||||||    
T  51355227 tttttagctaatatataaatacaaatgttag 51355197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 31784841 - 31784777
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaata 325  Q
    ||||||||||| |||||||   ||||||||| |||||||||| ||||||||||||||||||||||    
T  31784841 ccaaaatgtaagcaaaaatttgtcaacataagttgatgtatctaatacaaattttgaacaaaata 31784777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 3693989 - 3694062
Alignment:
Q  259 ttccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaat 332  Q
    |||||||||||||  | |||||  |||||||||||||||||||  |||||||||||||||  ||||| ||||||    
T  3693989 ttccaaaatgtaagtagaaatgagtcaacataaattgatgtatttaatacaaattttgaatcaaatacattaat 3694062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 18731994 - 18732064
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    ||||||| ||| ||||||||||||||||||||||||||||||   || ||||||||||| ||||| |||||    
T  18731994 ccaaaatataagcaaaaatggatcaacataaattgatgtatctggtataaattttgaaccaaatacattaa 18732064  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 31323920 - 31323850
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    ||||||||||| ||||||| | ||||||||| ||||||||||   |||||||||||||||||||| |||||    
T  31323920 ccaaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaa 31323850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 331
Target Start/End: Complemental strand, 33822393 - 33822324
Alignment:
Q  262 caaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    ||||||||||  |||||||||| || |||| |||||||||   ||||||||||||||| |||||||||||    
T  33822393 caaaatgtaagtaaaaatggattaatataagttgatgtatttgatacaaattttgaactaaatatattaa 33822324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 5495319 - 5495353
Alignment:
Q  60 tgttttttagctaatatataaatacaaatgttagc 94  Q
    ||||||||| |||||||||||||||||||||||||    
T  5495319 tgttttttaactaatatataaatacaaatgttagc 5495353  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 14222901 - 14222859
Alignment:
Q  259 ttccaaaatgtaaacaaaaatggatcaacataaattgatgtat 301  Q
    ||||||||||||| ||||||||| ||||||||| |||||||||    
T  14222901 ttccaaaatgtaagcaaaaatgggtcaacataagttgatgtat 14222859  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 16180439 - 16180509
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    ||||||||||| |||||||   ||||||||||||||||||| ||||| ||||||||||| ||||| |||||    
T  16180439 ccaaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaa 16180509  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 351
Target Start/End: Original strand, 25089919 - 25090010
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa-tatttttaccaatttttgct 351  Q
    |||||||||||  |||||||||| ||||||| ||| |||||   ||||||||||||||  |||||||| || | || |||||||||||||||    
T  25089919 ccaaaatgtaagaaaaaatggattaacataagttgttgtatttgatacaaattttgaagcaaatatatgaagttttgttaccaatttttgct 25090010  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 10459372 - 10459302
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    ||||||||||| |||| || | ||||||||| |||||| |||  ||||||||||||||| ||||| |||||    
T  10459372 ccaaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaa 10459302  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 11386414 - 11386344
Alignment:
Q  262 caaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaat 332  Q
    |||||| ||| ||||| | ||||||||||| |||||||||   ||||||||||||||  ||||||||||||    
T  11386414 caaaatataagcaaaatttgatcaacataagttgatgtatttgatacaaattttgaattaaatatattaat 11386344  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 29291068 - 29291138
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    |||| ||||||  ||||||| ||||||||||||||||||||| | || |  |||||||| |||||||||||    
T  29291068 ccaatatgtaagaaaaaatgaatcaacataaattgatgtatctagtaaattttttgaaccaaatatattaa 29291138  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 38935367 - 38935437
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    ||||||| ||| ||||||||  ||||||||| |||||||||   ||||| ||||||||||||||| |||||    
T  38935367 ccaaaatataagcaaaaatgagtcaacataagttgatgtatttgatacagattttgaacaaaatacattaa 38935437  T

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Target: scaffold0067 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 36046 - 35976
Alignment:
Q  261 ccaaaatgtaaacaaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    ||||||||||||||||||||  |||| ||||||||||||||   |||||||||||| || ||||| |||||    
T  36046 ccaaaatgtaaacaaaaatgagtcaatataaattgatgtatttgatacaaattttgtaccaaatacattaa 35976  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 8777862 - 8777805
Alignment:
Q  274 aaaaatggatcaacataaattgatgtatcaaatacaaattttgaacaaaatatattaa 331  Q
    |||||||||| ||||||| || ||||||  |||| ||||||||||| |||||||||||    
T  8777862 aaaaatggattaacataagttaatgtatttaatataaattttgaaccaaatatattaa 8777805  T

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