View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15318_low_25 (Length: 252)
Name: NF15318_low_25
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15318_low_25 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 2318273 - 2318506
Alignment:
| Q |
19 |
ataacacactagtctgaagacatccctaaacaaaaaagatggttctagaaaacacaatcaacacaagataccaataattggttatcaatgtgtagcactg |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2318273 |
ataacacactagtctcaagacatccctaaacaaaaaagatggttctagaaaacacaatcaacacaagataccaataattggttatcaatgtgtagcactg |
2318372 |
T |
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| Q |
119 |
caatgcaaatgtgcctaattgataagcatatatttatttaaatgtaaaaatgggacagtgtgagataattaacataagagagggtagaccaaaagcaatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2318373 |
caatgcaaatgtgcctaattgataagcatatatttatttaaatgtaaaaatgggacagtgtgagataattaacataagagagggtagaccaaaagcaatc |
2318472 |
T |
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| Q |
219 |
ctagtgaattttatccaatcaaacaaatataatt |
252 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2318473 |
gtagtgaattttatccaatcaaacaaatataatt |
2318506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 2309135 - 2309367
Alignment:
| Q |
19 |
ataacacactagtctgaagacatccctaaacaaaaaagatggttctagaaaacacaatcaacacaagataccaataattggttatcaatgtgtagcactg |
118 |
Q |
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||||||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| ||| |
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| T |
2309135 |
ataacacactaatctcaagacatccctaaacaaaaaagacggttctagaaa-cacaatcaacacaggataccaataatcagttatcaatgtgtagaacta |
2309233 |
T |
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| Q |
119 |
caatgcaaatgtgcctaattgataagcatatatttatttaaatgtaaaaatgggacagtgtgagataattaacataagagagggtagaccaaaagcaatc |
218 |
Q |
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|||||||||||| ||||||||||||||||||||| |||| |||| |||||| ||| ||||| | ||| |||||| ||||||||||||||||||||||| |
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| T |
2309234 |
caatgcaaatgtacctaattgataagcatatattcattttaatgccaaaatgagacggtgtgggttaactaacatcagagagggtagaccaaaagcaatt |
2309333 |
T |
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| Q |
219 |
ctagtgaattttatccaatcaaacaaatataatt |
252 |
Q |
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||||||||||||| ||||||| |||||||||| |
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| T |
2309334 |
tcagtgaattttatctaatcaaataaatataatt |
2309367 |
T |
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