View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15318_low_27 (Length: 209)
Name: NF15318_low_27
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15318_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 16734964 - 16734781
Alignment:
| Q |
11 |
tgagaagaagaatttcctttgttgattcctaacaatttcttcacagcaatttcatctccatttggcattgttcctttgtacacaacacctgctccacctc |
110 |
Q |
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| T |
16734964 |
tgagaagaagaatttcctttgttgattcctaacaatttcttcacagcaatttcatctccatttggcattgttcctttgtacacaacacctgctccacctc |
16734865 |
T |
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| Q |
111 |
ttcctatcacattgctttcctttatgcaacctatgatttcttcacttccatattccatcttctgaaatgctgttaatttccatg |
194 |
Q |
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| T |
16734864 |
ttcctatcacattgctttcctttatgcaacctatgatttcttcacttccatattccatcttctgaaatgctgttaatttccatg |
16734781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 39226267 - 39226435
Alignment:
| Q |
26 |
cctttgttgattcctaacaatttcttcacagcaatttcatctccatttggcattgttcctttgtacacaacacctgctccacctcttcctatcacattgc |
125 |
Q |
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|||||||| |||||||| || || |||||||| | || ||||||||||||||||||||| || |||||||| || || ||||||||||| | || | |
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| T |
39226267 |
cctttgttaattcctaataactttttcacagctactttttctccatttggcattgttcctccatatacaacaccagcacctcctcttcctatgatgttac |
39226366 |
T |
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| Q |
126 |
tttcctttatgcaacctatgatttcttcacttccatattccatcttctgaaatgctgttaatttccatg |
194 |
Q |
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| T |
39226367 |
tttcctttacacatcctaagatgtcttcacttccatattcaatcttctgaaatgctgttaacttccatg |
39226435 |
T |
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