View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15318_low_3 (Length: 806)
Name: NF15318_low_3
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15318_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 325 - 799
Target Start/End: Complemental strand, 38894151 - 38893677
Alignment:
| Q |
325 |
gtggattattttgatgttgaagttattaattaggagcaaggaggttaatagaattacctactcaaattcgatcttgagaatgcaacaatattaaaaaatt |
424 |
Q |
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| T |
38894151 |
gtggattattttgatgttgaagttattaattaggagcaaggaggttaatagaattacctacttaaatccggtcttgagaatgcaacaatattaaaagagt |
38894052 |
T |
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| Q |
425 |
taaagaagacatttatcgatcgtactctagtgatctaaagataatattaatctttgcagtttcacgttgaaatattgatttactaaatcaaaatagaaat |
524 |
Q |
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| T |
38894051 |
taaagaagacatttgtcgatcgtactccagtgatctaaagataatattaatttttacagtttcacgttgaaatattgatttactaaatcaaaatagaaat |
38893952 |
T |
|
| Q |
525 |
ttaagtgtatatctcataactttttacactaaggtaaaggtggcaattgagtgctagaggaagattgtaaagttgttaaaaaactattgaagggctgaaa |
624 |
Q |
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| T |
38893951 |
ttaagtgtatatctcataactttttacactaaggtaaaggtggcaattgagtgctagaggaagattgtaaagttgttaaaaaactattgaagggctgaaa |
38893852 |
T |
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| Q |
625 |
ttaagaagatatatatgcatgcaatgcaatgcatattcctttgaatccataaagcagtttcctttaaaaagtactttaannnnnnnnataaagggaaggg |
724 |
Q |
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| T |
38893851 |
ttaagaagatatatatgcatgcaatgcaatgcatattcctttgaatccataaagctgtttcctttaaaaaatgctttaattttttttataaagggaaggg |
38893752 |
T |
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| Q |
725 |
gggtttatggagttgtgggggaaaaggatatataggacaccgcttttggactccattattgctcaagttcatctc |
799 |
Q |
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| T |
38893751 |
ggttttatggagttgtgggggaaaaggatatataggacaccgcttttggactccattattgctcaagttcatctc |
38893677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 38894455 - 38894192
Alignment:
| Q |
18 |
acaaattttgtggggtgtatggttcaagttcagttcttacaacaagtgatcttgggtcagctgagagctatatttcaggtgaattgtcacaaatgccctc |
117 |
Q |
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| T |
38894455 |
acaaattttgtggggtgtatggttcaagttcagttcttacatcaagtgatcttgggtcagctgagagctatatttcaggtgaattgtcacaaatgccctc |
38894356 |
T |
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| Q |
118 |
cataaaacgaaggcgggtgcaaaatgaagagggtgtttggggacaaactagggattttcttggtgttggtggtgctaaccatttgccacagttcatcaat |
217 |
Q |
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| T |
38894355 |
cataaaacgaaggcgggtgcaaaatgaagagggtgtttggggacaaactagggattttcttggtgttggtggtgctaaccatttgccacagttcatcaat |
38894256 |
T |
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| Q |
218 |
cgacggatggatttgatttgatcttgtattcatgatggaagtctttaatttctttgttattttc |
281 |
Q |
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| T |
38894255 |
cgacggatggatttgatttgatcttgtattcatgatgaaagtctttaatttctttgttattttc |
38894192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 30516507 - 30516433
Alignment:
| Q |
161 |
caaactagggattttcttggtgttggtggtgctaaccatttgccacagttcatcaatcgacggatggatttgattt |
236 |
Q |
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| T |
30516507 |
caaactagggattttcttggtgttggt-gtgcaaaccatttgtcacccttcatcaatcaacggttggatttgattt |
30516433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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