View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15318_low_4 (Length: 632)
Name: NF15318_low_4
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15318_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 284 - 575
Target Start/End: Original strand, 11996115 - 11996407
Alignment:
| Q |
284 |
atctgtggaaattgtttatgtggttagttatttttgttactgccaattttctgtatgccagctctttgagtttataaattagatctaataaggtttaaga |
383 |
Q |
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| T |
11996115 |
atctgtggaaattgtttatgtggttagttatttttgttactgccaattttctgtatgccagctctttgagtttataaattagatctaataaggtttaaga |
11996214 |
T |
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| Q |
384 |
aaaaagcttatgttataaaaatgcttttgttactgccaatggtttg-aaaaaagagcttttcattacaaaagtatgttgaatgaactgatgatagtgatg |
482 |
Q |
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| T |
11996215 |
aaaaagcttatgttataaaaatgcttttgttactaccaatggtttgaaaaaaaaagcttttcattacaaaagtatgttgaatgaactgatgatagtgatg |
11996314 |
T |
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| Q |
483 |
ttagaataatcatttaattaacatcttaagatgatttactcacttatatgaaatcaccaaaaagttgagattttgaaatttatggtaaaaatt |
575 |
Q |
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| T |
11996315 |
ttggaataatcatttaattaacatcttaagatgatttacttacttatatgaaatcaccaaaaagttgagattttgaaatttatggtaagaatt |
11996407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 11995854 - 11995993
Alignment:
| Q |
19 |
cctctttccttttatcaaagaaaaaatactatgtaagtgtctctttccacttatcaactacaaacttgcatttcatttacttatatatactttattctca |
118 |
Q |
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| T |
11995854 |
cctctttccttttatcaaagaaaaaatactatgtaagtgtctctttccacttatcaactacaaacttgcatttcatttact----tatactttattctca |
11995949 |
T |
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| Q |
119 |
ttaattcttacatgcattttgaagtcttctgctgattctacact |
162 |
Q |
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| T |
11995950 |
ttaattcttacatgcattttgaagtcttctgctgattctacact |
11995993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 568 - 625
Target Start/End: Original strand, 11996429 - 11996486
Alignment:
| Q |
568 |
taaaaattgtacactgtaatttctttttctactcatagggtaccttgcacctttgcta |
625 |
Q |
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| T |
11996429 |
taaaaattgtacactgtaatttctttttctactcatagggtaccttgtacctttgcta |
11996486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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