View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15318_low_5 (Length: 615)
Name: NF15318_low_5
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15318_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 21 - 609
Target Start/End: Complemental strand, 7767221 - 7766629
Alignment:
| Q |
21 |
agaggccaccaagacttctcaaaagcttttctccctggaagcaagtgaaaacatagatatgcaaaagctaatttcaacttataataagagaagttattgt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767221 |
agaggccaccaagacttctcaaaagcttttctccctggaagcaagtgaaaacatagatatgcaaaagctaatttcaacttataataagagaagttattgt |
7767122 |
T |
|
| Q |
121 |
ttaaaatacttattagggtttcatcacaaaagagcaacatata----atatttttcataaaggtaaagcaacatgaagaagcaccatatagaagcacttg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7767121 |
ttaaaatacttattagggtttcatcacaaaagagcaacatatatataatatttttcataaaggtaaagcaacatgaagaagcaccgtatagaagcacttg |
7767022 |
T |
|
| Q |
217 |
nnnnnnnntgtatattaagaagattatacccgacttaaatgtccatcaatgtccgcggtgacatggtgagtcctagtaatttgctcaccctggtgatgaa |
316 |
Q |
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| T |
7767021 |
aaaaaaaatgtatattaagaagattatacccgacttaaatgtccatcaatgtccgcggcgacatggtgagtcctagtaatttgctcaccctggtgatgaa |
7766922 |
T |
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| Q |
317 |
gggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggaccgatttcgtagtctcctcagccttgtgaacagcata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7766921 |
gggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggaccgatttcgtagtctcctcagccttgtgaacagcata |
7766822 |
T |
|
| Q |
417 |
atcttccaactcctgtacagaatcattctctgatccaccagattcacggagattctttgaatttaacattatcactctttttgaagacattctcactcaa |
516 |
Q |
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| T |
7766821 |
atcttccaactcctgtacagaatcattctctgatccaccagattcacggagattctttgaatttaacattatcactctttttgaagacattctcactcaa |
7766722 |
T |
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| Q |
517 |
gaagtgcagaatcaaggtgcagtgcgccagtgcggtccttaacgctgcggaagcacaacagtcccaacaagtaactagggtttttcttctcac |
609 |
Q |
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| T |
7766721 |
gaagtgcagaatcaaggtgcagtgcgccagtgcggtccttaacgctgcggaagcacaacagtcccaacaagtaactagggtttttcttttcac |
7766629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 8e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 225 - 431
Target Start/End: Original strand, 45392506 - 45392712
Alignment:
| Q |
225 |
tgtatattaagaagattatacccgacttaaatgtccatcaatgtccgcggtgacatggtgagtcctagtaatttgctcaccctggtgatgaagggtgaca |
324 |
Q |
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| T |
45392506 |
tgtatattaagaagattatacccgacttaaatctcgatcaatgtcggtggcgacatggtgactcctagtaatttgctcaccctggtgatgaagggtgacc |
45392605 |
T |
|
| Q |
325 |
aatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggaccgatttcgtagtctcctcagccttgtgaacagcataatcttcca |
424 |
Q |
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| T |
45392606 |
aatgtcttggcagcatcctctcttatgttctctgctatcttcaaacaattgtgtaccgatttggtagtctcctcagccttgtaaacagcataattctcca |
45392705 |
T |
|
| Q |
425 |
actcctg |
431 |
Q |
| |
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||||||| |
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| T |
45392706 |
actcctg |
45392712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 45392144 - 45392186
Alignment:
| Q |
21 |
agaggccaccaagacttctcaaaagcttttctccctggaagca |
63 |
Q |
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| T |
45392144 |
agaggccaccaaggcttcccaaaagcttttctccctggaagca |
45392186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 430
Target Start/End: Original strand, 7216621 - 7216769
Alignment:
| Q |
282 |
gtgagtcctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggacc |
381 |
Q |
| |
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|||| |||||||||| ||||| ||||| ||||| || |||| || ||||||||||||| |||| || | |||||||||||| |||||| | ||| |
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| T |
7216621 |
gtgactcctagtaatctgctcgccctgatgatgcagcatgaccaaagtcttggtagcatcttctcgcatttcctctgctatcttccgacaattgtttacc |
7216720 |
T |
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| Q |
382 |
gatttcgtagtctcctcagccttgtgaacagcataatcttccaactcct |
430 |
Q |
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| T |
7216721 |
gattttgtcgtctcttcagctttgtaaacagcatactcctccaaatcct |
7216769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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