View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15318_low_6 (Length: 562)

Name: NF15318_low_6
Description: NF15318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15318_low_6
NF15318_low_6
[»] chr3 (3 HSPs)
chr3 (38-548)||(35497510-35498023)
chr3 (198-344)||(29246653-29246811)
chr3 (371-431)||(29246877-29246937)
[»] chr7 (2 HSPs)
chr7 (198-431)||(11210997-11211233)
chr7 (193-304)||(46254001-46254113)
[»] chr6 (1 HSPs)
chr6 (199-238)||(2780810-2780849)
[»] chr1 (2 HSPs)
chr1 (371-431)||(36658352-36658412)
chr1 (206-238)||(36658212-36658244)
[»] chr5 (2 HSPs)
chr5 (371-431)||(32520092-32520152)
chr5 (210-251)||(32521615-32521656)
[»] chr2 (2 HSPs)
chr2 (266-304)||(29717312-29717350)
chr2 (374-431)||(35976011-35976068)
[»] chr4 (1 HSPs)
chr4 (456-497)||(19444434-19444475)


Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 38 - 548
Target Start/End: Original strand, 35497510 - 35498023
Alignment:
Q  38 gatactataatactcgtcccgatatctgtatctgtaaaacaaacatgtttgtatccgagttcatactttgtaggcagcaattttactctgtctccatacc 137  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35497510 gatactataatactcgtcccgatatctgcatctgtaaaacaaacatgtttgtatccgagttcatactttgtaggcagcaattttactctgtctccatacc 35497609  T
Q  138 ctgtgtgcatttaagtgacatacctgtgcctattccatgtactttagtacca--gtgacaacaaaa-aatataacaattaacaaataatttagagatgat 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||    
T  35497610 ctgtgtgcatttaagtgacatacctgtgcctattccatgtactttagtaccaaagtgacaacaaaaaaatataacaattaacaaataatttagagatgat 35497709  T
Q  235 tcaatagtttgtatttagaacaatatgtattcatagttgactaacgataaaaacacgacaacaacaaaaatggatgcaaagaagaagagatgtccatcgg 334  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||    
T  35497710 tcaatagtttgtatttagaacaatatatattcatagttgactaacgataaaaacacgacaacaataaaaatagatgcaaagaagaagagatgtcgatcgg 35497809  T
Q  335 taacttatgaaaaggaagtagcaataatgattgttcaggtttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaaatc 434  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35497810 taacttatgaaaaggaagtagcaattatgattgttcaggtttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaaatc 35497909  T
Q  435 atataagattggctgtaccgacactcatatccattcaaatatatgggtaattatccgtgcccaaactcagaatcataaatgcatgtgtttatcctgctca 534  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||  | ||||||||||||||||||||||||| ||    
T  35497910 atataagattggccgtaccgacactcatacccattcaaatatatgggtaattatccgagcccaaactcgaactcataaatgcatgtgtttatcctgccca 35498009  T
Q  535 tcattgtgaatatt 548  Q
    |||| |||||||||    
T  35498010 tcatcgtgaatatt 35498023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 344
Target Start/End: Original strand, 29246653 - 29246811
Alignment:
Q  198 aaaaaatataacaattaacaaataatttagagatgattcaatagtttgtatttag-aacaatatgtatt-------catagttgactaacgataaaaaca 289  Q
    ||||||| |||||  |||||||||||||||||||||||||| | || |||||| | ||| ||||||||        ||||||||||||||||||||||||    
T  29246653 aaaaaatgtaacatataacaaataatttagagatgattcaacaattcgtattttggaaccatatgtatgatgtatccatagttgactaacgataaaaaca 29246752  T
Q  290 cgacaacaaca-aaaatggatgc---aaagaagaagagatgtccatcggtaacttatga 344  Q
     |||||||||| |||||||||||   |||||| |||||||||| ||| ||| |||||||    
T  29246753 agacaacaacagaaaatggatgcacaaaagaacaagagatgtcgatcagtagcttatga 29246811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 431
Target Start/End: Original strand, 29246877 - 29246937
Alignment:
Q  371 aggtttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaa 431  Q
    ||||||||||||| ||||| |||||||   ||||| |||||||||| |||||| |||||||    
T  29246877 aggtttaaataattgtaaaaaagtttacgattaattaactttaatgatatatacatttaaa 29246937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 198 - 431
Target Start/End: Complemental strand, 11211233 - 11210997
Alignment:
Q  198 aaaaaatataacaattaacaaataatttagagatgattcaatagtttgtatttagaacaatatgtattcatagttgactaacgataaaaacacgacaaca 297  Q
    ||||||| ||||||||||||||||||||||||||||||||| | ||| |||||  ||| | |  ||| |||||||||||||||||||||| |  ||||||    
T  11211233 aaaaaatgtaacaattaacaaataatttagagatgattcaacaatttctatttgaaaccaca--tatccatagttgactaacgataaaaataaaacaaca 11211136  T
Q  298 acaaaaatggatgcaaagaagaagagatgtccatcggtaa-cttatgaaaaggaagtagcaataatgattgttcagg------tttaaataatagtaaag 390  Q
       |||||||||||| | ||||||||||||| |||||||| | || || || |||| | ||| || ||||||| |||      ||||||||||| ||||     
T  11211135 --gaaaatggatgcacaaaagaagagatgtcgatcggtaagcataagagaaagaagcaacaacaacgattgtttaggtttagatttaaataataataaaa 11211038  T
Q  391 aagtttatatttaatcaactttaatggtatataaatttaaa 431  Q
    | ||||| | ||||||| |||||||||||||||||||||||    
T  11211037 atgtttacaattaatcatctttaatggtatataaatttaaa 11210997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 193 - 304
Target Start/End: Complemental strand, 46254113 - 46254001
Alignment:
Q  193 acaacaaaaaata-taacaattaacaaataatttagagatgattcaatagtttgtatttagaacaatatgtattcatagttgactaacgataaaaacacg 291  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||| | |||||||||  ||| |||||| | ||||||||||||| |||||||| | |    
T  46254113 acaacaaaaaaaagtaacaattaacaaataatttagagatgattcaacaatttgtatttgaaaccatatgtctccatagttgactaatgataaaaataag 46254014  T
Q  292 acaacaacaaaaa 304  Q
    |||| ||||||||    
T  46254013 acaagaacaaaaa 46254001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 2780810 - 2780849
Alignment:
Q  199 aaaaatataacaattaacaaataatttagagatgattcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2780810 aaaaatataacaattaacaaataatttagagatgattcaa 2780849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 431
Target Start/End: Original strand, 36658352 - 36658412
Alignment:
Q  371 aggtttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaa 431  Q
    ||||||||||||||||||| | ||||| | |||||||||||||||| ||||||||| ||||    
T  36658352 aggtttaaataatagtaaaaatgtttacacttaatcaactttaatgatatataaatataaa 36658412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 36658212 - 36658244
Alignment:
Q  206 taacaattaacaaataatttagagatgattcaa 238  Q
    ||||||||||||||||||||| |||||||||||    
T  36658212 taacaattaacaaataatttaaagatgattcaa 36658244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 431
Target Start/End: Complemental strand, 32520152 - 32520092
Alignment:
Q  371 aggtttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaa 431  Q
    |||||||||||||  |||| ||||||| | |||||||||||||||||||| || |||||||    
T  32520152 aggtttaaataattataaaaaagtttacaattaatcaactttaatggtatgtagatttaaa 32520092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 32521656 - 32521615
Alignment:
Q  210 aattaacaaataatttagagatgattcaatagtttgtattta 251  Q
    ||||||||||||||||||||||||||||| | ||| ||||||    
T  32521656 aattaacaaataatttagagatgattcaacaatttttattta 32521615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 29717350 - 29717312
Alignment:
Q  266 catagttgactaacgataaaaacacgacaacaacaaaaa 304  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  29717350 catagttgactaacgataaaaacaagacaacaagaaaaa 29717312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 35976068 - 35976011
Alignment:
Q  374 tttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaa 431  Q
    |||||||| | ||||| ||||||| | |||||  ||||||||||||||||||||||||    
T  35976068 tttaaatatttgtaaaaaagtttacaattaattgactttaatggtatataaatttaaa 35976011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 497
Target Start/End: Complemental strand, 19444475 - 19444434
Alignment:
Q  456 cactcatatccattcaaatatatgggtaattatccgtgccca 497  Q
    |||||||| |||||||||| | ||||||||||||||||||||    
T  19444475 cactcatacccattcaaatttgtgggtaattatccgtgccca 19444434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University