View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15319_low_1 (Length: 556)
Name: NF15319_low_1
Description: NF15319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15319_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 37167594 - 37167699
Alignment:
| Q |
137 |
gataaatcttttacaatagtcttctgcttgacatctttcctttccaaatgccacttttttgacatattatcagcctataaatcgaagttttggcatttga |
236 |
Q |
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| T |
37167594 |
gatagatcttttacaatagccttctgtttgacatcttccctttccaaatgccactttcttgacatattctcagcctataaatcaaaattttggcttttga |
37167693 |
T |
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| Q |
237 |
gttatg |
242 |
Q |
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|||||| |
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| T |
37167694 |
gttatg |
37167699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 399
Target Start/End: Original strand, 37170151 - 37170246
Alignment:
| Q |
304 |
aaatgagagcattcatcacaagcaaactaatacaagaagaatgaaacctaccatttgtgagctcttcggatgctgcttttatcttctccgagttaa |
399 |
Q |
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| T |
37170151 |
aaatgagagcattcatcgcaaccaaattaatatgagaagaatgatacatacgatttgcaagcccttcagatgctgctttcaacttttccgggttaa |
37170246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 472 - 541
Target Start/End: Original strand, 10479013 - 10479082
Alignment:
| Q |
472 |
gtatggttttccgtaaacatactaaaagaacagaattattacaggttccaaacaaaaaactacttcattt |
541 |
Q |
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| T |
10479013 |
gtatggctttccgtaaacatactaaaagaacagagttattacaggttccaaacaaaaaactacttcattt |
10479082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 10478896 - 10478946
Alignment:
| Q |
344 |
atgaaacctaccatttgtgagctcttcggatgctgcttttatcttctccga |
394 |
Q |
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| T |
10478896 |
atgaaacctaccatttgtgagctcttcggatgctgcttttatcttctccga |
10478946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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