View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15319_low_2 (Length: 350)
Name: NF15319_low_2
Description: NF15319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15319_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 165 - 333
Target Start/End: Original strand, 55141512 - 55141680
Alignment:
| Q |
165 |
tctttcagcataaatgtataaattttaaataacttaatatatgcacacaagccataaggcataaattactctttgtctttttgccacttatagagagcaa |
264 |
Q |
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| T |
55141512 |
tctttcagcataaatgtttaaattttaaataacttaatatatgcacacaagccataaggcataaattatcctttgtcttttggccacttatagagagcaa |
55141611 |
T |
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| Q |
265 |
caaagaaaatagaatatttatttattctaaatacgaaaaagagaatagaaaagaagcaaatatgagtta |
333 |
Q |
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| T |
55141612 |
caaagaaaatagaatatttatttattgtaaatacgaaaaagagaatagaaaagaagcaaatatgagtta |
55141680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 55141366 - 55141479
Alignment:
| Q |
2 |
agcatcacagattccatatctcgaaaataaatttatcttctctaagaaaatactgatatgtacccgaagggcgtaagtttaagttaatgaactagttatc |
101 |
Q |
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| T |
55141366 |
agcatcacagtttccatatgtcgaaaataaatttatcttctctaagaaaatactgatatgtacccgaagggcgtaagtttaagttaatgaactaattatc |
55141465 |
T |
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| Q |
102 |
accatatgtccttc |
115 |
Q |
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| T |
55141466 |
accatatgtccttc |
55141479 |
T |
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