View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1531_1D_high_10 (Length: 442)

Name: NF1531_1D_high_10
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1531_1D_high_10
NF1531_1D_high_10
[»] chr8 (3 HSPs)
chr8 (24-272)||(14111340-14111588)
chr8 (333-406)||(14112521-14112594)
chr8 (264-301)||(14111607-14111644)
[»] chr6 (4 HSPs)
chr6 (24-272)||(35240764-35241012)
chr6 (264-408)||(35241031-35241175)
chr6 (334-406)||(35240358-35240430)
chr6 (329-384)||(31121210-31121265)
[»] chr4 (4 HSPs)
chr4 (316-406)||(1961987-1962077)
chr4 (316-406)||(1962559-1962649)
chr4 (329-384)||(25506234-25506289)
chr4 (126-183)||(1962275-1962335)
[»] chr3 (2 HSPs)
chr3 (366-407)||(44087921-44087962)
chr3 (329-384)||(40396862-40396917)
[»] chr7 (1 HSPs)
chr7 (329-384)||(36071944-36071999)
[»] chr2 (1 HSPs)
chr2 (98-183)||(1573993-1574080)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 14111340 - 14111588
Alignment:
Q  24 caattgtcgctatttcgaagcatgtaaatttgaaattcagttgataatgaaaccaaccattttgcatcaagtaaatttgaaattaggttaatctagaata 123  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14111340 caattgtcactatttcgaagcatgtaaatttgaaattcagttgataatgaacccaaccattttgcatcaagtaaatttgaaattaggttaatctagaata 14111439  T
Q  124 ataagaaatggaaatcaagcttaaacatcagaaaatatacccagagaatgagagaaggaaataagagggagaaatagtgaaggatgaaggaaggacgtca 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14111440 ataagaaatggaaatcaagcttaaacatcagaaaatatacccagagaatgagagaaggaaataagagggagaaataatgaaggatgaaggaaggacgtca 14111539  T
Q  224 ccgttggtgcaccgcggaacaaacttcaatggcagaaacggtgtgtgaa 272  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14111540 ccgttggtgcaccgcggaacaaacttcaatggcagaaacggtttgtgaa 14111588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 333 - 406
Target Start/End: Original strand, 14112521 - 14112594
Alignment:
Q  333 taaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaattggactggagacaatccattccc 406  Q
    ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14112521 taaaagaaatggagggctcagattgcttcacaggagaaaacatgagaaaattggactggagacaatccattccc 14112594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 301
Target Start/End: Original strand, 14111607 - 14111644
Alignment:
Q  264 gtgtgtgaaaggaaagagacaaaatccatcataattaa 301  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  14111607 gtgtgtgaaaggaaagagacaaaatccattataattaa 14111644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 35240764 - 35241012
Alignment:
Q  24 caattgtcgctatttcgaagcatgtaaatttgaaattcagttgataatgaaaccaaccattttgcatcaagtaaatttgaaattaggttaatctagaata 123  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35240764 caattgtcactttttcgaagcatgtaaatttgaaattcagttgataatgaacccaaccattttgcatcaagtaaatttgaaattaggttaatctagaata 35240863  T
Q  124 ataagaaatggaaatcaagcttaaacatcagaaaatatacccagagaatgagagaaggaaataagagggagaaatagtgaaggatgaaggaaggacgtca 223  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35240864 ataagaaatggaaatcaatcttaaacatcagaaaatatacccagagaatgagagaaggaaataagagggagaaatattgaaggatgaaggaaggacgtca 35240963  T
Q  224 ccgttggtgcaccgcggaacaaacttcaatggcagaaacggtgtgtgaa 272  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35240964 ccgttggtgcaccgcggaacaaacttcaatggcagaaacggtttgtgaa 35241012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 264 - 408
Target Start/End: Original strand, 35241031 - 35241175
Alignment:
Q  264 gtgtgtgaaaggaaagagacaaaatccatcataattaattgttcttgtttttagccattgatctatcattaaaagaaatggacggctcaaattgcttcac 363  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||| ||||||||||    
T  35241031 gtgtgtgaaaggaaagagacaaaatccatcataattatttgttcttgtttttagccgttgatctatcattcaaagaaatggagggctcagattgcttcac 35241130  T
Q  364 aggagaaaacaggagaaaattggactggagacaatccattcccct 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35241131 aggagaaaacaggagaaaattggactggagacaatccattcccct 35241175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 35240430 - 35240358
Alignment:
Q  334 aaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaattggactggagacaatccattccc 406  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  35240430 aaaagaaatggaaggctcagattgcttcacaggagaaaacaggagaaaatttgactggagacaatcctttccc 35240358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 31121210 - 31121265
Alignment:
Q  329 tcattaaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaatt 384  Q
    |||||||||||||||||||||| | |||| ||||||||||||||| |||| |||||    
T  31121210 tcattaaaagaaatggacggctaagattgattcacaggagaaaactggaggaaatt 31121265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 406
Target Start/End: Complemental strand, 1962077 - 1961987
Alignment:
Q  316 agccattgatctatcattaaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaattggactggagacaatccattccc 406  Q
    |||| |||||||  ||||||||| |||||| ||||   |||||| ||||||||||||| ||||||| || |||||||||||||||||||||    
T  1962077 agccgttgatctgccattaaaaggaatggagggctatgattgctccacaggagaaaactggagaaattttgactggagacaatccattccc 1961987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 406
Target Start/End: Original strand, 1962559 - 1962649
Alignment:
Q  316 agccattgatctatcattaaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaattggactggagacaatccattccc 406  Q
    |||| |||||||  ||||||||| |||| | ||||   |||||| ||||||||||||||||||||| || |||||||||||||||||||||    
T  1962559 agccgttgatcttccattaaaaggaatgaagggctgtgattgctccacaggagaaaacaggagaaattttgactggagacaatccattccc 1962649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 25506289 - 25506234
Alignment:
Q  329 tcattaaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaatt 384  Q
    |||||||||||||||||||||| | |||| ||||||||||||||| |||| |||||    
T  25506289 tcattaaaagaaatggacggctaagattgattcacaggagaaaactggaggaaatt 25506234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 1962335 - 1962275
Alignment:
Q  126 aagaaatggaaatcaagcttaaaca---tcagaaaatatacccagagaatgagagaaggaa 183  Q
    |||||||||||| ||| ||||||||   ||||||||||||| ||||||||| |||||||||    
T  1962335 aagaaatggaaagcaatcttaaacaacatcagaaaatatacacagagaatgtgagaaggaa 1962275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 44087962 - 44087921
Alignment:
Q  366 gagaaaacaggagaaaattggactggagacaatccattcccc 407  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  44087962 gagaaaacaggaggaaattggactggagacaatccattcccc 44087921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 40396862 - 40396917
Alignment:
Q  329 tcattaaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaatt 384  Q
    |||||||||| |||||| |||| | |||  ||||||||||||||||||||||||||    
T  40396862 tcattaaaaggaatggatggctaagattatttcacaggagaaaacaggagaaaatt 40396917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 36071944 - 36071999
Alignment:
Q  329 tcattaaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaatt 384  Q
    |||||||||  |||||| |||||||||||||||||| |||||||| |||| |||||    
T  36071944 tcattaaaaagaatggagggctcaaattgcttcacacgagaaaactggaggaaatt 36071999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 1574080 - 1573993
Alignment:
Q  98 atttgaaattaggttaatctagaataataagaaatggaaatcaagcttaaac---atcagaaaatatacccagagaatgagagaaggaa 183  Q
    |||||||||||||||||| | ||||||||| ||||||||| | | |||||||   |||||||||| |||  |||||||| |||||||||    
T  1574080 atttgaaattaggttaat-ttgaataataataaatggaaagccatcttaaacaatatcagaaaatttacttagagaatgggagaaggaa 1573993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University