View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1531_1D_high_16 (Length: 322)

Name: NF1531_1D_high_16
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1531_1D_high_16
NF1531_1D_high_16
[»] scaffold0029 (1 HSPs)
scaffold0029 (6-322)||(134449-134765)
[»] scaffold0002 (2 HSPs)
scaffold0002 (6-322)||(312276-312592)
scaffold0002 (6-322)||(327730-328046)
[»] chr4 (11 HSPs)
chr4 (35-322)||(8654697-8654984)
chr4 (6-322)||(3129577-3129890)
chr4 (69-322)||(47541154-47541406)
chr4 (129-322)||(2631627-2631820)
chr4 (138-322)||(7662966-7663150)
chr4 (175-322)||(23873240-23873387)
chr4 (175-322)||(55298849-55298996)
chr4 (129-322)||(20675251-20675444)
chr4 (129-322)||(8486699-8486892)
chr4 (6-55)||(7662904-7662953)
chr4 (257-322)||(49926112-49926177)
[»] chr5 (5 HSPs)
chr5 (6-322)||(10486515-10486831)
chr5 (129-322)||(34481176-34481369)
chr5 (208-322)||(587745-587859)
chr5 (267-308)||(23923092-23923133)
chr5 (277-314)||(27795720-27795757)
[»] chr1 (7 HSPs)
chr1 (31-322)||(21528390-21528685)
chr1 (14-322)||(36306013-36306321)
chr1 (129-322)||(37530795-37530988)
chr1 (175-322)||(32353061-32353208)
chr1 (129-322)||(48073149-48073342)
chr1 (241-322)||(48265548-48265629)
chr1 (250-322)||(30970447-30970519)
[»] chr3 (12 HSPs)
chr3 (38-322)||(49731559-49731843)
chr3 (9-322)||(30166942-30167255)
chr3 (129-322)||(2813218-2813411)
chr3 (129-322)||(29309637-29309830)
chr3 (129-322)||(6176196-6176389)
chr3 (201-322)||(9379326-9379447)
chr3 (250-322)||(23602002-23602074)
chr3 (258-322)||(25872955-25873019)
chr3 (250-307)||(8943596-8943653)
chr3 (277-316)||(48569905-48569944)
chr3 (279-317)||(46248738-46248776)
chr3 (264-316)||(18368808-18368860)
[»] chr7 (8 HSPs)
chr7 (9-322)||(15653303-15653616)
chr7 (9-276)||(46623968-46624235)
chr7 (129-322)||(13440282-13440475)
chr7 (129-310)||(12378446-12378627)
chr7 (250-322)||(45943080-45943152)
chr7 (193-316)||(43105546-43105669)
chr7 (279-317)||(27723973-27724011)
chr7 (251-316)||(41339760-41339825)
[»] chr8 (6 HSPs)
chr8 (6-322)||(7452581-7452897)
chr8 (129-319)||(16420728-16420918)
chr8 (251-316)||(12134563-12134628)
chr8 (273-322)||(19384572-19384621)
chr8 (268-314)||(13879344-13879390)
chr8 (266-314)||(7555684-7555732)
[»] chr2 (12 HSPs)
chr2 (9-322)||(45421748-45422062)
chr2 (4-322)||(13550353-13550671)
chr2 (129-321)||(26894330-26894522)
chr2 (129-321)||(26899769-26899961)
chr2 (175-322)||(43627728-43627875)
chr2 (226-322)||(31085452-31085548)
chr2 (226-322)||(33548101-33548197)
chr2 (4-244)||(13550884-13551124)
chr2 (267-316)||(36804147-36804196)
chr2 (267-322)||(22052856-22052911)
chr2 (278-316)||(36804362-36804400)
chr2 (268-314)||(40176905-40176951)
[»] scaffold0131 (1 HSPs)
scaffold0131 (6-199)||(4144-4337)
[»] chr6 (9 HSPs)
chr6 (4-322)||(26205577-26205895)
chr6 (175-322)||(25318083-25318230)
chr6 (129-322)||(23347185-23347378)
chr6 (175-322)||(15674054-15674205)
chr6 (270-314)||(33630334-33630378)
chr6 (251-314)||(4474935-4474998)
chr6 (292-322)||(1683269-1683299)
chr6 (250-316)||(5041753-5041819)
chr6 (4-58)||(25318347-25318401)
[»] scaffold0418 (2 HSPs)
scaffold0418 (138-322)||(7904-8088)
scaffold0418 (6-55)||(8101-8149)
[»] scaffold0112 (1 HSPs)
scaffold0112 (251-316)||(15490-15555)


Alignment Details
Target: scaffold0029 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 134449 - 134765
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatg 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| |||||||||||||||||||||||||||||    
T  134449 gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg 134548  T
Q  106 gagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtc 205  Q
    ||||| |||||       ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  134549 gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 134648  T
Q  206 tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgt 305  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  134649 tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 134748  T
Q  306 agggctttacttcttga 322  Q
    |||||||||||||||||    
T  134749 agggctttacttcttga 134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 312276 - 312592
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatg 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| |||||||||||||||||||||||||||||    
T  312276 gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg 312375  T
Q  106 gagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtc 205  Q
    ||||| |||||       ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  312376 gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 312475  T
Q  206 tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgt 305  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  312476 tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 312575  T
Q  306 agggctttacttcttga 322  Q
    |||||||||||||||||    
T  312576 agggctttacttcttga 312592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 327730 - 328046
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatg 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| |||||||||||||||||||||||||||||    
T  327730 gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg 327829  T
Q  106 gagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtc 205  Q
    ||||| |||||       ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  327830 gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 327929  T
Q  206 tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgt 305  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  327930 tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 328029  T
Q  306 agggctttacttcttga 322  Q
    |||||||||||||||||    
T  328030 agggctttacttcttga 328046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 35 - 322
Target Start/End: Original strand, 8654697 - 8654984
Alignment:
Q  35 tcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctgatacgnnnnnnnggttggatagg 134  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||       |||||||||||    
T  8654697 tcttaggggtagtgttggtgctggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggatagg 8654796  T
Q  135 tggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcgg 234  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654797 tggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcgg 8654896  T
Q  235 agcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8654897 agcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 8654984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 3129577 - 3129890
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatg 105  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | || ||||||||||||| |||||||||||||||||||||||    
T  3129577 gtttcgtgttggtggagggaggtgagtcgttttaggggtagtgatggtgatggagagggcggctggtttgttgatcatgtggctaggagggttggagatg 3129676  T
Q  106 gagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtc 205  Q
    ||||||||||        |||| | |||||||||||||||||||||||||||||| |||||  |||| |||||||||||||||||||||||||| |||||    
T  3129677 gagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtc 3129776  T
Q  206 tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgt 305  Q
    ||||||||||||||| ||| ||||||||||||||   || |||  |||||||||||||||| | ||||||| ||||||||||    ||||||||||||||    
T  3129777 tgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggaggag---atgttagcggagtgt 3129873  T
Q  306 agggctttacttcttga 322  Q
    |||||||||||||||||    
T  3129874 agggctttacttcttga 3129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 69 - 322
Target Start/End: Complemental strand, 47541406 - 47541154
Alignment:
Q  69 tggtttgttgatcttgtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttcc 168  Q
    ||||||||||||| ||||||||| ||| |||||||||||| |||||||       |||| ||||||||||||||||||||||||||||||||||||||      
T  47541406 tggtttgttgatcatgtggctagaagg-ttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgttttt 47541308  T
Q  169 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtag 268  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  ||| ||| ||||||||||||||||| |    
T  47541307 gtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcg 47541208  T
Q  269 gttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
     ||||||| |||| |||||||  |||||||||||||||||||||||||||||||    
T  47541207 tttgtggcagtggaaggaggagatgttagcggagtgtagggctttacttcttga 47541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 129 - 322
Target Start/End: Complemental strand, 2631820 - 2631627
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  2631820 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttg 2631721  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  2631720 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 138 - 322
Target Start/End: Original strand, 7662966 - 7663150
Alignment:
Q  138 ttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 237  Q
    |||||||||||||| || ||||| ||||| |||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  238 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||  |||  |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| |||||||||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7663150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 175 - 322
Target Start/End: Original strand, 23873240 - 23873387
Alignment:
Q  175 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 274  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| |   |||||||||||||||||||||  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  275 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23873387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 55298996 - 55298849
Alignment:
Q  175 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 274  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| |   ||||||||||||||||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  275 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 55298849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 129 - 322
Target Start/End: Complemental strand, 20675444 - 20675251
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||||||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| ||| || ||||| |||||| | | |||||    
T  20675444 gataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttgctctttgttg 20675345  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| | |  ||||||||| |||||||||||||    
T  20675344 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttcttga 20675251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 129 - 322
Target Start/End: Original strand, 8486699 - 8486892
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || |  |||||| | |||||||    
T  8486699 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg 8486798  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||| | |||||| |   |||||||||||||||||||||| |||| ||||||| |||| ||| |||   ||||||||||||||||||||||    
T  8486799 attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttga 8486892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 7662904 - 7662953
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtga 55  Q
    ||||||||||||||| |||||||||||||| |||||| ||||| ||||||    
T  7662904 gtttcgtgttggtggggggaggtgagtcgtattagggatagtggtggtga 7662953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 49926112 - 49926177
Alignment:
Q  257 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    |||||| || || ||||||  |||||||||||| ||||||| ||||||||||||||| || |||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttga 49926177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 10486515 - 10486831
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |  | ||||||||||||| |||||||||||||||||||||||    
T  10486515 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgatggtgatggagagtgcagctggtttgttgatcatgtggctaggagggttggagatg 10486614  T
Q  106 gagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtc 205  Q
    |||||||||||       ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||    
T  10486615 gagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaataagttcatgtc 10486714  T
Q  206 tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgt 305  Q
    ||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  10486715 tgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatgttagcggagtgt 10486814  T
Q  306 agggctttacttcttga 322  Q
    |||||||||||||||||    
T  10486815 agggctttacttcttga 10486831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 129 - 322
Target Start/End: Complemental strand, 34481369 - 34481176
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||||||||||| |||||| |||||||  | ||  || || |||||||||||||||||||||||| ||||||||||||| | ||| | |||||||    
T  34481369 gataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatgtctgtggcatatttgctctctgttg 34481270  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  34481269 attcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttga 34481176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 208 - 322
Target Start/End: Complemental strand, 587859 - 587745
Alignment:
Q  208 tggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 307  Q
    ||||| ||||||| |||||   ||||||||| ||||| | | | ||||||||||| |||||| | ||| |||||||||||||  |||||| |||||||||    
T  587859 tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag 587760  T
Q  308 ggctttacttcttga 322  Q
    |||||||||||||||    
T  587759 ggctttacttcttga 587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 23923133 - 23923092
Alignment:
Q  267 aggttgtggctgtgggaggaggacttgttagcggagtgtagg 308  Q
    ||||||||| |||||||||||||  |||||||||||||||||    
T  23923133 aggttgtgggtgtgggaggaggagatgttagcggagtgtagg 23923092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 27795757 - 27795720
Alignment:
Q  277 tgtgggaggaggacttgttagcggagtgtagggcttta 314  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  27795757 tgtgggaggaggacttggtagaggagtgtagggcttta 27795720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 31 - 322
Target Start/End: Complemental strand, 21528685 - 21528390
Alignment:
Q  31 gtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctgatacgnnnnnnnggttgga 130  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||       |||||||    
T  21528685 gtcgtcttaggggtagtgatggtgatggagagagcggatggtttgttgatcatgtggctaggagggttggagatgaagctgatacgttgttttggttgga 21528586  T
Q  131 taggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgat 230  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||| |||||||||    
T  21528585 taggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaataagttcatgtctgttggagacttgttctctgttgat 21528486  T
Q  231 tcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggag----tgtagggctttacttcttga 322  Q
    |||||||| ||||| ||| |||||||||||||||||||||| |||  ||||||||||||| ||||||||| |     |||||||||||||||||||    
T  21528485 tcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggaggacatgttagcggtggagacgtagggctttacttcttga 21528390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 36306321 - 36306013
Alignment:
Q  14 ttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctgat 113  Q
    ||||||||||||||||||||||||||| | ||||||| |||| || ||  |||| |||||||| |  |  |||||||||||||||||||||||  |||||    
T  36306321 ttggtggagggaggtgagtcgtcttagtgatagtgttagtgagggtgattgtgggtggtttgtcggccacgtggctaggagggttggagatggttctgat 36306222  T
Q  114 acgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcag 213  Q
    |||       |||  |||||||||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||||||| | |||| ||||||||    
T  36306221 acgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcag 36306122  T
Q  214 acttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggcttt 313  Q
    ||||||| |||||||||| |||||||  ||| ||| | ||||||||||| ||||| ||||||| |||| |||||||  |||||| |||||||||||||||    
T  36306121 acttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggcttt 36306022  T
Q  314 acttcttga 322  Q
    |||||||||    
T  36306021 acttcttga 36306013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 129 - 322
Target Start/End: Complemental strand, 37530988 - 37530795
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||||||||||| |||||| |||||||  |  |  || || |||||||||||||||||||||||  ||||| ||||||||||||| | |||||||    
T  37530988 gataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgtggcagacttgctctctgttg 37530889  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  37530888 attcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttga 37530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 175 - 322
Target Start/End: Original strand, 32353061 - 32353208
Alignment:
Q  175 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 274  Q
    |||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| |||||| |   |||||||||||||||||||||| ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  275 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    || |||| ||||||| ||| |||  |||||||||||||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttga 32353208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 129 - 322
Target Start/End: Original strand, 48073149 - 48073342
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  48073149 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 48073248  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||  |||||||||||| ||| |||  |||||| ||||||||||||||||    
T  48073249 attcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttcttga 48073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 48265548 - 48265629
Alignment:
Q  241 ggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    |||| ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  48265548 ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga 48265629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 30970447 - 30970519
Alignment:
Q  250 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||||||| ||||| ||||||  ||||||||||||  || | |||||||||||||| |||||||||||    
T  30970447 tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttga 30970519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 38 - 322
Target Start/End: Original strand, 49731559 - 49731843
Alignment:
Q  38 taggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtgg 137  Q
    ||||||||||| ||||||||||||| | || ||||||||||||| |||||||||||||||||||||||||||||| ||        |||| |||||||||    
T  49731559 taggggtagtgatggtgatggagagtgcggctggtttgttgatcatgtggctaggagggttggagatggagctgacacattgttttggtttgataggtgg 49731658  T
Q  138 ttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 237  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||    
T  49731659 ttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagc 49731758  T
Q  238 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    || |||| ||| ||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||    
T  49731759 agcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagttgttggcggagtgtagggctttacttcttga 49731843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 30166942 - 30167255
Alignment:
Q  9 tcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggag 108  Q
    ||||||||||||||||||||||||||| |||||| ||||| |||||| || ||  |||| ||||||| || ||  ||||||||||||||||| |||||      
T  30166942 tcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggtt 30167041  T
Q  109 ctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt 208  Q
    ||||||||       |||||||||||||||||||||||||||| || ||||| ||||| |||||  ||||||||||||||||||||||| | |||| |||    
T  30167042 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgt 30167141  T
Q  209 ggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagg 308  Q
    |||||||||||| |||||||||  |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||||||||  |||||||||||||||||    
T  30167142 ggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagg 30167241  T
Q  309 gctttacttcttga 322  Q
     |||||||||||||    
T  30167242 actttacttcttga 30167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 322
Target Start/End: Original strand, 2813218 - 2813411
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  2813218 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 2813317  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  2813318 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2813411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 129 - 322
Target Start/End: Complemental strand, 29309830 - 29309637
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| ||||| |||||| | ||||| |    
T  29309830 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtcg 29309731  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||| |||||||||||    
T  29309730 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttcttga 29309637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 129 - 322
Target Start/End: Original strand, 6176196 - 6176389
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||| ||||||||||| |||||| || || |||||| | |||||||    
T  6176196 gataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgacttgctctctgttg 6176295  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||| |   |||||||||||||||||||||| | || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  6176296 attcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 6176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 322
Target Start/End: Complemental strand, 9379447 - 9379326
Alignment:
Q  201 atgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcgg 300  Q
    |||| ||||||| ||||||| | ||||||||| ||||||||||| | ||||||||||||||| || ||||| |||| |||||||||||   |||||||||    
T  9379447 atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg 9379348  T
Q  301 agtgtagggctttacttcttga 322  Q
    |||||||||| ||||| |||||    
T  9379347 agtgtagggcattactacttga 9379326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 23602074 - 23602002
Alignment:
Q  250 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||||||||| |||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23602074 tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23602002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 25872955 - 25873019
Alignment:
Q  258 tggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||| ||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttga 25873019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
Q  250 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 307  Q
    |||||| |||||||||||||||||||  ||||||||| || |||| ||||||||||||    
T  8943653 tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag 8943596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 48569905 - 48569944
Alignment:
Q  277 tgtgggaggaggacttgttagcggagtgtagggctttact 316  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  48569905 tgtgggaggaggacttggtagaggagtgtagggctttact 48569944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
Q  279 tgggaggaggacttgttagcggagtgtagggctttactt 317  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  46248738 tgggaggaagacttgttaggggagtgtagggctttactt 46248776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 18368808 - 18368860
Alignment:
Q  264 cgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 316  Q
    |||||||||||| ||||||||||||  ||| ||| |||||||||||| |||||    
T  18368808 cgtaggttgtgggtgtgggaggaggctttgctagaggagtgtagggcattact 18368860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 15653303 - 15653616
Alignment:
Q  9 tcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggag 108  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| || ||  |||| ||||||||||  |  ||||||||||||||||||||||||     
T  15653303 tcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttgttggccacgtggctaggagggttggagatggat 15653402  T
Q  109 ctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt 208  Q
    ||||||||       |||| |||||||||||||||||||||||||||||||  ||||| ||||| |||||||||||||| ||||||||| | |||||| |    
T  15653403 ctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaataagctcatgtctat 15653502  T
Q  209 ggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagg 308  Q
    |||||||||||| |||||||||| |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||||||||  |||||||||||||||||    
T  15653503 ggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagg 15653602  T
Q  309 gctttacttcttga 322  Q
    ||||||||||||||    
T  15653603 gctttacttcttga 15653616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 46624235 - 46623968
Alignment:
Q  9 tcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggag 108  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| || || ||  |||| |||||||||| ||  ||||||||||||||| |||||||      
T  46624235 tcgtgttggtggagggaggtgagtcgtattagggatagtgttggcgagggtgactgtgggtggtttgttggtcacgtggctaggagggttagagatggtt 46624136  T
Q  109 ctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt 208  Q
    ||||||||       |||| |||||||||||||||||||||||||| ||||| ||||| || || |||||||||||||| ||||||||| | ||||||||    
T  46624135 ctgatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgt 46624036  T
Q  209 ggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggc 276  Q
    |||||||||||| |||||||||| |||||||  |||  |||| ||||||||||| ||||| |||||||    
T  46624035 ggcagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggc 46623968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 322
Target Start/End: Complemental strand, 13440475 - 13440282
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  13440475 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 13440376  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||| |   ||||||||||||||||||| || |||  |||||||||||| ||| |||  |||||| ||||||||||||||||    
T  13440375 attcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttcttga 13440282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 310
Target Start/End: Original strand, 12378446 - 12378627
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||| |||||||||||||| | ||||  || |  | ||| |||||||||||||  ||||||||| | |||||||||||| | ||||| | ||||     
T  12378446 gataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttgttctttgtta 12378545  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggc 310  Q
    | ||| ||| |||||| | ||||| |||| |||| || |||||||||| ||||||||||||  |||||||||||||||||||    
T  12378546 agtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtagggc 12378627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 45943152 - 45943080
Alignment:
Q  250 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||||||| |||| || |||| |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  45943152 tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 45943080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 316
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
Q  193 ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggactt 292  Q
    |||||| | |||| |||||||||||||| |||  |  |||| | || ||||| | ||||||||||||||| || ||||||||||  |||||||||||  |    
T  43105669 ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat 43105570  T
Q  293 gttagcggagtgtagggctttact 316  Q
    |||||| ||||||||||| |||||    
T  43105569 gttagcagagtgtagggcgttact 43105546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
Q  279 tgggaggaggacttgttagcggagtgtagggctttactt 317  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  27723973 tgggaggaagacttgttaggggagtgtagggctttactt 27724011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 41339825 - 41339760
Alignment:
Q  251 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 316  Q
    |||||||||| || | |||||||||  |||||||||||| || |||| |||||||||| |||||||    
T  41339825 gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttact 41339760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 7452897 - 7452581
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatg 105  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| || ||  |||| |||||| | |  |  ||||||||||||||||||||||    
T  7452897 gtttcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttctcgcccacgtggctaggagggttggagatg 7452798  T
Q  106 gagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtc 205  Q
    |  ||||||||       |||  |||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||||| |||||||    
T  7452797 gttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtc 7452698  T
Q  206 tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgt 305  Q
    ||||||||||||||| |||||||||| |||||||  ||| ||| | ||||||||||| ||||| ||||||| |||||||||||  || |||| |||||||    
T  7452697 tgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgt 7452598  T
Q  306 agggctttacttcttga 322  Q
    |||||||||||||||||    
T  7452597 agggctttacttcttga 7452581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 129 - 319
Target Start/End: Original strand, 16420728 - 16420918
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  16420728 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttg 16420827  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttct 319  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||| ||||||||||||||||    
T  16420828 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct 16420918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
Q  251 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 316  Q
    |||||||||| | |||| |||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  12134628 gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact 12134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
Q  273 tggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    |||| ||||||||||||  |||||| ||||||||||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga 19384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 13879344 - 13879390
Alignment:
Q  268 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 314  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  13879344 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 13879390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 7555732 - 7555684
Alignment:
Q  266 taggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 314  Q
    |||||||||| ||||||||||| | || |||| ||||||||||||||||    
T  7555732 taggttgtgggtgtgggaggagaatttattagaggagtgtagggcttta 7555684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 45422062 - 45421748
Alignment:
Q  9 tcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggag 108  Q
    ||||||||||||||||||||||||||| |||||| ||||| |||||| || ||  |||| ||||||| || ||  ||||||||||||||||| |||||      
T  45422062 tcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggtt 45421963  T
Q  109 ctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgt 208  Q
    ||||||||       |||||||||||||||||||||||||||| || ||||| ||||| |||||  ||||||||||||||||||||||| | |||| |||    
T  45421962 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgt 45421863  T
Q  209 ggcagacttgttatctgttgattcggagcag-tggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 307  Q
    |||||||||||| |||||||||  |||||||  ||||  |||| ||||||||||| ||||| |||| || ||||||||||||  ||||||||||||||||    
T  45421862 ggcagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtag 45421763  T
Q  308 ggctttacttcttga 322  Q
    |||||| ||||||||    
T  45421762 ggcttttcttcttga 45421748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 13550671 - 13550353
Alignment:
Q  4 gagtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggaga 103  Q
    ||||||| |||||||||  |||||||||||||||||||||||| ||||||| ||| |  || || |||||||  ||||  |||   ||||| ||||| ||    
T  13550671 gagtttcttgttggtggtcggaggtgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgttgaggagagttggtga 13550572  T
Q  104 tggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatg 203  Q
    ||| || |||||        |||| ||||||||| ||||||| | |||| || ||||  | ||  || || |||||||||||||||||||||||| |||     
T  13550571 tggggcagatacatcattttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctata 13550472  T
Q  204 tctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagt 303  Q
    |  ||||| |||||| | ||||||||||||||||||||||| | | |||||||||||||||||||||| |||| |||||| ||||||||| ||| |||||    
T  13550471 ttcgtggcggacttgctttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagt 13550372  T
Q  304 gtagggctttacttcttga 322  Q
    | ||||||||| |||||||    
T  13550371 gcagggctttaattcttga 13550353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 321
Target Start/End: Original strand, 26894330 - 26894522
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||  | |||||| | |||||||    
T  26894330 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttg 26894429  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttg 321  Q
     |||||||| ||||||     |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  26894430 cttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 321
Target Start/End: Original strand, 26899769 - 26899961
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||  | |||||| | |||||||    
T  26899769 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttg 26899868  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttg 321  Q
     |||||||| ||||||     |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  26899869 cttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 43627875 - 43627728
Alignment:
Q  175 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 274  Q
    |||||||||||||||||||||||| |||||  ||||| |||||| | ||| |||||||||||  |||||| |   |||||||||||||||||||||| ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  275 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 43627728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 31085452 - 31085548
Alignment:
Q  226 ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||| ||||||||||| | | |||||||||||||| | |||||||| | ||||||||||||  ||||||| |||||||||||||||||||||||    
T  31085452 ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga 31085548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 226 - 322
Target Start/End: Complemental strand, 33548197 - 33548101
Alignment:
Q  226 ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  33548197 ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 33548101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 13551124 - 13550884
Alignment:
Q  4 gagtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggaga 103  Q
    ||||||| |||||||||  |||||||||||||||||||||||| ||||||| ||| |  || || |||||||  ||||  |||   ||||| ||||| ||    
T  13551124 gagtttcttgttggtggtcggaggtgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgttgaggagagttggtga 13551025  T
Q  104 tggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatg 203  Q
    ||| || |||||        |||| ||||||||| ||||||| | |||| || ||||  | ||  || || |||||||||||||||||||||||| |||     
T  13551024 tggggcagatacatcattttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctata 13550925  T
Q  204 tctgtggcagacttgttatctgttgattcggagcagtgggg 244  Q
    |  ||||| |||||| | |||||||||||||||||||||||    
T  13550924 ttcgtggcggacttgctttctgttgattcggagcagtgggg 13550884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 36804196 - 36804147
Alignment:
Q  267 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 316  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttact 36804147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 22052911 - 22052856
Alignment:
Q  267 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  22052911 aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 22052856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 36804400 - 36804362
Alignment:
Q  278 gtgggaggaggacttgttagcggagtgtagggctttact 316  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36804400 gtgggaggaggacttgttagaggagtgtagggctttact 36804362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 40176951 - 40176905
Alignment:
Q  268 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 314  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  40176951 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 40176905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 4144 - 4337
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatg 105  Q
    |||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||    
T  4144 gtttcgtggtggtggagggaggtgagtcgtattaggggtagtgatggtgatggagagagcggttggtttgttgatcatgtggctcggagggttggagatg 4243  T
Q  106 gagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtt 199  Q
    ||||| |||||       ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  4244 gagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaatagagaataagtt 4337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 26205895 - 26205577
Alignment:
Q  4 gagtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggaga 103  Q
    ||||||| |||||||||  |||||||||||||||||||||||| ||||||| ||| |  || || ||||||   ||||  |||   ||||| ||||| ||    
T  26205895 gagtttcttgttggtggtcggaggtgagtcgtcttaggggtagggttggtgttggtggtagcggttggtttaaggatcaggtgttgaggagagttggtga 26205796  T
Q  104 tggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatg 203  Q
    ||  ||||||||        |||| ||||||||| || |||| | |||| || ||||  | ||  || || |||||||||||||| ||||||||||||||    
T  26205795 tgaggctgatacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaaagaataagtttatg 26205696  T
Q  204 tctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagt 303  Q
    || ||||| |||||| |||||||||||||  ||| |||||| | |||||||||||||| ||||||||| |||| |||||||||||| ||| ||| |||||    
T  26205695 tccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggaggagttgctagaggagt 26205596  T
Q  304 gtagggctttacttcttga 322  Q
    |||||||||||||||||||    
T  26205595 gtagggctttacttcttga 26205577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 25318230 - 25318083
Alignment:
Q  175 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 274  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||| | |||||||||||||| ||||||||| ||    
T  25318230 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 25318131  T
Q  275 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    || |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  25318130 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 25318083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 322
Target Start/End: Original strand, 23347185 - 23347378
Alignment:
Q  129 gataggtggttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 228  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  23347185 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgacttgctctctgttg 23347284  T
Q  229 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23347285 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23347378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 15674205 - 15674054
Alignment:
Q  175 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggc----gttttgtggaggtggagacgtaggt 270  Q
    ||||||||||||| |||||||||| |||||||||||| |||||  | ||||||||||| ||||  ||||||    |   |||||||||||||||||||||    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  271 tgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    |||||| |||||||||||| ||| |||  ||||| |||||||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga 15674054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 33630378 - 33630334
Alignment:
Q  270 ttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 314  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggcttta 33630334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
Q  251 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 314  Q
    |||||||||||||||||||||||||  |||||||||| | || |||| ||||| |||| |||||    
T  4474998 gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta 4474935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 322
Target Start/End: Complemental strand, 1683299 - 1683269
Alignment:
Q  292 tgttagcggagtgtagggctttacttcttga 322  Q
    |||||||||||||||||||||||||||||||    
T  1683299 tgttagcggagtgtagggctttacttcttga 1683269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 5041819 - 5041753
Alignment:
Q  250 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 316  Q
    ||||||||||| | ||| | |||||| |||||||||| || ||||||| |||||||||||| |||||    
T  5041819 tgtggaggtggcgtcgtggtttgtgggtgtgggaggaagagttgttagaggagtgtagggcattact 5041753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 25318401 - 25318347
Alignment:
Q  4 gagtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatgg 58  Q
    ||||||| |||||||||  ||||||||||||||||||| |||| ||||||| |||    
T  25318401 gagtttcttgttggtggtcggaggtgagtcgtcttaggtgtagggttggtgttgg 25318347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 138 - 322
Target Start/End: Complemental strand, 8088 - 7904
Alignment:
Q  138 ttaggggatgttcctttttgtgttcgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 237  Q
    |||||||||||||| || ||||| ||||| |||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  238 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 322  Q
    ||  |||  |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| |||||||||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 8149 - 8101
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgttggtga 55  Q
    ||||||||||||||| |||||||||||||| |||||| ||||| ||||||    
T  8149 gtttcgtgttggtgg-gggaggtgagtcgtattagggatagtggtggtga 8101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 15490 - 15555
Alignment:
Q  251 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 316  Q
    |||||||||| | || || ||||||  ||||||||||||  |||||| ||||||||||||||||||    
T  15490 gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttact 15555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University