View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1531_1D_high_26 (Length: 249)

Name: NF1531_1D_high_26
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1531_1D_high_26
NF1531_1D_high_26
[»] chr3 (19 HSPs)
chr3 (78-249)||(2699339-2699511)
chr3 (78-174)||(4862286-4862383)
chr3 (78-174)||(4846441-4846538)
chr3 (83-174)||(29541638-29541730)
chr3 (84-173)||(7982705-7982795)
chr3 (82-174)||(7137342-7137435)
chr3 (83-172)||(21153234-21153323)
chr3 (78-172)||(4849088-4849187)
chr3 (87-170)||(17037880-17037963)
chr3 (83-173)||(17035294-17035385)
chr3 (82-174)||(49758006-49758099)
chr3 (210-242)||(42070130-42070162)
chr3 (78-144)||(4857305-4857372)
chr3 (78-144)||(4879033-4879100)
chr3 (210-249)||(12946349-12946388)
chr3 (85-136)||(38869957-38870008)
chr3 (83-144)||(13867736-13867798)
chr3 (83-174)||(37681410-37681503)
chr3 (91-174)||(46530299-46530383)
[»] chr2 (14 HSPs)
chr2 (83-174)||(44856814-44856906)
chr2 (83-174)||(27591160-27591252)
chr2 (81-174)||(16568314-16568408)
chr2 (83-172)||(20111050-20111139)
chr2 (83-136)||(4552369-4552422)
chr2 (83-174)||(11538437-11538529)
chr2 (78-173)||(33201671-33201767)
chr2 (83-144)||(9045149-9045211)
chr2 (95-174)||(11550031-11550111)
chr2 (85-157)||(21384588-21384661)
chr2 (82-157)||(129715-129791)
chr2 (88-157)||(150454-150523)
chr2 (87-121)||(41207534-41207568)
chr2 (83-136)||(40026406-40026459)
[»] chr4 (15 HSPs)
chr4 (87-173)||(38579257-38579344)
chr4 (83-173)||(44277236-44277327)
chr4 (83-157)||(12294681-12294756)
chr4 (83-174)||(24636854-24636946)
chr4 (83-174)||(56084681-56084774)
chr4 (78-120)||(4815936-4815978)
chr4 (83-174)||(14065344-14065437)
chr4 (87-174)||(38004470-38004558)
chr4 (83-170)||(53354034-53354122)
chr4 (83-130)||(10306854-10306901)
chr4 (210-249)||(27530741-27530780)
chr4 (79-121)||(17942526-17942568)
chr4 (78-157)||(21393088-21393165)
chr4 (87-121)||(28808220-28808254)
chr4 (78-119)||(37441955-37441996)
[»] chr8 (18 HSPs)
chr8 (83-174)||(11876342-11876434)
chr8 (83-174)||(11891349-11891441)
chr8 (83-174)||(31267573-31267665)
chr8 (82-174)||(28622195-28622288)
chr8 (87-174)||(12701581-12701669)
chr8 (83-174)||(9014848-9014940)
chr8 (84-174)||(38745107-38745198)
chr8 (83-157)||(4438912-4438985)
chr8 (83-168)||(15920124-15920210)
chr8 (83-157)||(7975826-7975901)
chr8 (78-121)||(33300028-33300070)
chr8 (83-144)||(6234812-6234874)
chr8 (209-239)||(13004034-13004064)
chr8 (78-136)||(19341900-19341958)
chr8 (83-156)||(45553799-45553873)
chr8 (83-136)||(15899140-15899193)
chr8 (83-136)||(29132948-29133001)
chr8 (88-120)||(32161999-32162031)
[»] chr7 (24 HSPs)
chr7 (83-174)||(38636250-38636342)
chr7 (83-158)||(13640989-13641065)
chr7 (81-174)||(29357069-29357163)
chr7 (88-156)||(6025351-6025420)
chr7 (83-174)||(33797252-33797344)
chr7 (82-174)||(39436815-39436909)
chr7 (83-172)||(43140589-43140678)
chr7 (83-136)||(13703370-13703423)
chr7 (91-174)||(2475487-2475571)
chr7 (83-162)||(11373165-11373245)
chr7 (83-174)||(13638325-13638417)
chr7 (87-170)||(19346426-19346510)
chr7 (87-174)||(38151535-38151623)
chr7 (88-157)||(39618333-39618403)
chr7 (83-136)||(40358537-40358590)
chr7 (87-174)||(7806826-7806914)
chr7 (83-157)||(10040750-10040826)
chr7 (83-157)||(35093659-35093734)
chr7 (83-157)||(35096907-35096982)
chr7 (83-157)||(42851060-42851135)
chr7 (83-144)||(35070884-35070946)
chr7 (83-136)||(13703069-13703122)
chr7 (83-136)||(14625044-14625097)
chr7 (83-136)||(35079552-35079605)
[»] chr1 (13 HSPs)
chr1 (87-173)||(4653715-4653802)
chr1 (82-144)||(3086037-3086100)
chr1 (87-172)||(3156129-3156215)
chr1 (78-166)||(29688976-29689065)
chr1 (83-136)||(37317215-37317268)
chr1 (83-174)||(13241315-13241407)
chr1 (83-174)||(43020808-43020900)
chr1 (83-174)||(45478970-45479063)
chr1 (85-174)||(15716915-15717005)
chr1 (87-136)||(11067045-11067094)
chr1 (87-128)||(27971531-27971572)
chr1 (83-174)||(38340168-38340261)
chr1 (84-136)||(23252830-23252882)
[»] scaffold0025 (1 HSPs)
scaffold0025 (87-174)||(11736-11823)
[»] chr5 (18 HSPs)
chr5 (78-176)||(39585096-39585193)
chr5 (82-174)||(1584520-1584613)
chr5 (83-144)||(9666223-9666285)
chr5 (83-172)||(39178047-39178137)
chr5 (94-174)||(11487144-11487225)
chr5 (83-170)||(9051076-9051164)
chr5 (83-174)||(27175232-27175324)
chr5 (83-158)||(42522648-42522724)
chr5 (83-157)||(28479630-28479705)
chr5 (78-128)||(1134324-1134374)
chr5 (83-174)||(41613439-41613532)
chr5 (83-150)||(1592165-1592232)
chr5 (83-134)||(17822135-17822186)
chr5 (83-121)||(34450013-34450051)
chr5 (83-136)||(42422618-42422671)
chr5 (84-136)||(1585765-1585816)
chr5 (87-174)||(7734074-7734162)
chr5 (83-174)||(43008314-43008405)
[»] chr6 (6 HSPs)
chr6 (83-169)||(11573438-11573525)
chr6 (84-174)||(22793206-22793297)
chr6 (87-174)||(23659307-23659396)
chr6 (78-157)||(2536494-2536574)
chr6 (83-170)||(8174455-8174542)
chr6 (83-158)||(15926111-15926187)
[»] scaffold0013 (1 HSPs)
scaffold0013 (83-144)||(97075-97137)
[»] scaffold0018 (1 HSPs)
scaffold0018 (83-174)||(36854-36946)
[»] scaffold0003 (1 HSPs)
scaffold0003 (83-144)||(226339-226401)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 2699511 - 2699339
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataattttagt 176  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2699511 gaatttttgttatattattgttgtcatcgaaaaatataaatatgctttattgagtttgttacatttgagaatcacaaatattcatacttataattttagt 2699412  T
Q  177 atgtaagagaaaaatattttttgctagtatacaaaaaatatttaatagaaacattatattaatacttataatt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  2699411 atgtaagagaaaaatattttttgctagtatacaaaaaatatttaatagaaacatgacattaatacttataatt 2699339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 4862286 - 4862383
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||| ||||||||| | ||||| ||||| |||||| ||||||||    
T  4862286 gaatttttgttatattattgttgtcattgagaaagataaatatggtttattgagtttgttacatttgaaagtcacatatatttatacttgtaatttta 4862383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 4846441 - 4846538
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||||||||||||||||| ||  || ||||||||| ||| ||||||||| ||||||||| | ||||| ||||| |||||||||||||||    
T  4846441 gaatttttgttatattattgttgtcattgagtaagataaatatggtttgttgagtttgttacatttgaaagtcacatatatttatacttataatttta 4846538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 29541730 - 29541638
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||||| ||| || ||||||||| ||| ||||||| | ||||||||| | ||||||||||  |||||||||||||||    
T  29541730 tttgttatattattgttgtcattgaataagataaatatggtttgttgagttcgttacatttgaaagtcacaaatatatatacttataatttta 29541638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 7982795 - 7982705
Alignment:
Q  84 ttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttt 173  Q
    |||| |||||||||||||||| |||||||||||||||| ||| || |||||| ||||||||| | ||||||||||  || |||||||||||    
T  7982795 ttgtgatattattgttgtcattgaaaaatataaatatggtttgtttagtttgttacatttgaaagtcacaaatatctatgcttataatttt 7982705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 7137435 - 7137342
Alignment:
Q  82 ttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||||||  ||||| ||||||||| ||| ||||||||| || |||||| | ||| ||||||  |||||||||||||||    
T  7137435 ttttgttatattattgttgtcattaaaaaagataaatatggtttgttgagtttgttatatttgaaagtcataaatatctatacttataatttta 7137342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 21153323 - 21153234
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataattt 172  Q
    |||||||||||||||||||||| | |||| ||||||||| |||||| |||||| ||||||||| ||||| ||||||  ||| |||||||||    
T  21153323 tttgttatattattgttgtcattgtaaaaaataaatatggtttatt-agtttgttacatttgaaaatcataaatatctatatttataattt 21153234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 4849088 - 4849187
Alignment:
Q  78 gaatttttgttatattattgttgtcat--agaaaaat--ataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataattt 172  Q
    |||||||||||||||||||||||||||  ||||| ||  ||||||||  ||| ||||||||| ||||||||| | ||||| ||||| |||||||||||||    
T  4849088 gaatttttgttatattattgttgtcattgagaaagataaataaatatagtttgttgagtttgttacatttgaaagtcacatatatttatacttataattt 4849187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 170
Target Start/End: Complemental strand, 17037963 - 17037880
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataat 170  Q
    |||||||||| ||||||| |||||| ||||||||| ||| |||| ||||| |||||||| | ||||||||||| |||||||||||    
T  17037963 ttatattatttttgtcattgaaaaa-ataaatatggtttgttgaatttgttacatttgaaagtcacaaatatttatacttataat 17037880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 17035294 - 17035385
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttt 173  Q
    |||||||||| ||||||||||| |||||||||||||||| ||| || |||||| || |||||| |  |||||||||  ||| ||||||||||    
T  17035294 tttgttatatcattgttgtcattgaaaaatataaatatggtttgttaagtttgttagatttgaaagccacaaatatctataattataatttt 17035385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 49758099 - 49758006
Alignment:
Q  82 ttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||| | |||| |  |||||||||||||||  || |||||||| | |||||||| | ||||||||| | |||||||||||||||    
T  49758099 ttttgttatattatcgatgtctttcaaaaatataaatatgaattgttgagtttattacatttgaaagtcacaaatacttatacttataatttta 49758006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 42070162 - 42070130
Alignment:
Q  210 aaaaatatttaatagaaacattatattaatact 242  Q
    |||||||||||||||||||||||||||||||||    
T  42070162 aaaaatatttaatagaaacattatattaatact 42070130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 4857305 - 4857372
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttga 144  Q
    ||||||||||||||||||||||||||| || ||  ||||||||  ||| ||||||||| |||||||||    
T  4857305 gaatttttgttatattattgttgtcattgagaatcataaatattgtttgttgagtttgttacatttga 4857372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 4879033 - 4879100
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttga 144  Q
    ||||||||||||||||||||||||||| || ||  ||||||||  ||| ||||||||| |||||||||    
T  4879033 gaatttttgttatattattgttgtcattgagaatcataaatattgtttgttgagtttgttacatttga 4879100  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 12946388 - 12946349
Alignment:
Q  210 aaaaatatttaatagaaacattatattaatacttataatt 249  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  12946388 aaaaatatttaatagaaacattacattaatactgataatt 12946349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 38869957 - 38870008
Alignment:
Q  85 tgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    |||||||||||| |||| || |||||| ||||||||| ||||||||||||||    
T  38869957 tgttatattatttttgttattgaaaaagataaatatgatttattgagtttgt 38870008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 13867798 - 13867736
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttga 144  Q
    ||||||||| ||||||| ||||  ||||||||||||||| ||| ||||||||| |||||||||    
T  13867798 tttgttataatattgttatcattaaaaaatataaatatggtttgttgagtttgttacatttga 13867736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 37681410 - 37681503
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tac-atttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||| ||||||||||| || |||||| ||||| ||| ||| ||| ||||| ||| |||||| | |||||||||||  ||||||||||||||    
T  37681410 tttgttaaattattgttgttattgaaaaagataaacatgattttttgggtttgttacaatttgaaagtcacaaatatttgtacttataatttta 37681503  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 46530299 - 46530383
Alignment:
Q  91 attattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||| | |||| ||||||||| ||| || | ||||| | |||||| | ||||||||||  |||||||||||||||    
T  46530299 attattgttgtcattggaaaagataaatatggtttgttaactttgttatatttgaaagtcacaaatatctatacttataatttta 46530383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 44856906 - 44856814
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||||| ||||||| |||||||| ||| ||||||||| ||||||||| ||||||||||||  |||||||||||||||    
T  44856906 tttgttatattattgttgtcattgaaaaatgtaaatatgatttgttgagtttgttacatttgaaaatcacaaatatctatacttataatttta 44856814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 27591160 - 27591252
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||||| |||||| ||||||||| ||| |||| |||| ||||||||| | ||||||||||  |||||||||||||||    
T  27591160 tttgttatattattgttgtcattgaaaaagataaatatgatttgttgaatttgttacatttgaaagtcacaaatatctatacttataatttta 27591252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 16568314 - 16568408
Alignment:
Q  81 tttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||||||| |||||||||||||| | ||| || | |||| ||||||||| | ||||||||||| |||||||| ||||||    
T  16568314 tttttgttatattattgttgtcattgaaaaatataaatacggtttgttaaatttgttacatttgaaactcacaaatatttatacttattatttta 16568408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 20111050 - 20111139
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataattt 172  Q
    |||||||||||||||||||||| | |||||||||||||| ||| ||||||||| ||||||||| ||||||||||||  ||| |||||||||    
T  20111050 tttgttatattattgttgtcattggaaaatataaatatggtttgttgagtttgttacatttga-aatcacaaatatctatatttataattt 20111139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 4552369 - 4552422
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  4552369 tttgttatattattgttgtcattgaaaaatataaatatggtttattgagtttgt 4552422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 11538437 - 11538529
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||| ||||| ||||||||||| |||||| ||||||||| ||| ||||||||| ||||||||| | ||||||||||| | ||||||| |||||    
T  11538437 tttgctatatgattgttgtcattgaaaaaaataaatatggtttgttgagtttgttacatttgaaactcacaaatatttacacttatactttta 11538529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 173
Target Start/End: Original strand, 33201671 - 33201767
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttt 173  Q
    |||||||||||||||| || ||||||| |||||| |||| |||| ||| |||| |||| ||||||||| | ||||||| ||| ||||||||||||||    
T  33201671 gaatttttgttatattgtttttgtcattgaaaaagataactatggtttgttgaatttgttacatttgaaagtcacaaacatttatacttataatttt 33201767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 9045211 - 9045149
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttga 144  Q
    ||||||||||||||| |||||| |||||||||||||||| ||| ||||||||| |||||||||    
T  9045211 tttgttatattattgctgtcattgaaaaatataaatatggtttgttgagtttgttacatttga 9045149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 11550031 - 11550111
Alignment:
Q  95 ttgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||| |||||| ||||||||| ||  |||||||||| |||||||| | ||||||||||| |||||| ||||||||    
T  11550031 ttgttgtcattgaaaaagataaatatggttggttgagtttgttacatttgaaactcacaaatatttatacttctaatttta 11550111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 21384661 - 21384588
Alignment:
Q  85 tgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatat 157  Q
    ||||||||||||| |||||| |||||  ||||||||| ||||||||||||| ||||||||| | ||||| ||||    
T  21384661 tgttatattattggtgtcattgaaaacgataaatatggtttattgagtttgttacatttgaaagtcacatatat 21384588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 129791 - 129715
Alignment:
Q  82 ttttgttatattattgttgtcatagaaaaatataaatatgctttattgagttt-gtacatttgagaatcacaaatat 157  Q
    |||||||||||||||||||| || |||||  ||||||||| ||| ||||||||  ||||||||| | ||||||||||    
T  129791 ttttgttatattattgttgttattgaaaatgataaatatggtttgttgagtttaatacatttgaaagtcacaaatat 129715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 150454 - 150523
Alignment:
Q  88 tatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatat 157  Q
    ||||||||||||||||| |||||| ||||||||| ||| ||||||||| ||||||| | | ||||||||||    
T  150454 tatattattgttgtcattgaaaaa-ataaatatggtttgttgagtttgttacatttaaaagtcacaaatat 150523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 121
Target Start/End: Original strand, 41207534 - 41207568
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatg 121  Q
    |||||||||||||||||| ||||||||||||||||    
T  41207534 ttatattattgttgtcattgaaaaatataaatatg 41207568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 40026406 - 40026459
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    |||| ||||||||||||||||| ||||| || ||||||| ||| ||||||||||    
T  40026406 tttgctatattattgttgtcattgaaaattaaaaatatgatttgttgagtttgt 40026459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 38579257 - 38579344
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttt 173  Q
    |||||||||| ||||||| |||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||  ||||||||||||||    
T  38579257 ttatattatttttgtcattgaaaaatataaatatggtttgttgagtttgctacatttgaaaatcacaaatatctatacttataatttt 38579344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 44277327 - 44277236
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttt 173  Q
    |||||||||||||||||||||| |||||||||||||||| ||| ||||||||| ||||||| | | ||||||||||  ||| ||||||||||    
T  44277327 tttgttatattattgttgtcattgaaaaatataaatatggtttgttgagtttgttacatttaaaagtcacaaatatctatatttataatttt 44277236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 12294681 - 12294756
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatat 157  Q
    ||||||||||||||||| |||| |||||||||||||||| ||| ||||||||| ||||||||| | ||||||||||    
T  12294681 tttgttatattattgttctcattgaaaaatataaatatggtttgttgagtttgttacatttgaaattcacaaatat 12294756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 24636854 - 24636946
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||| |||||||| | || |||||| ||||||||| ||| |||||||||| |||||||| | ||||||||||  |||||||||||||||    
T  24636854 tttgttattttattgttttgatggaaaaagataaatatggtttgttgagtttgttacatttgaaagtcacaaatatctatacttataatttta 24636946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 56084774 - 56084681
Alignment:
Q  83 tttgttatattattgttgtca-tagaaaaatataaatatgctttattgagtttgtac-atttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||||||| ||| ||  |||| ||||||||| ||| |||||||||| | |||||| ||||||||||||  |||||||||||||||    
T  56084774 tttgttatattattgttatcaatatgaaaagataaatatggtttgttgagtttgttccatttgaaaatcacaaatatctatacttataatttta 56084681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 4815936 - 4815978
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatat 120  Q
    ||||||||||||||||||||||||||| |||||| ||||||||    
T  4815936 gaatttttgttatattattgttgtcattgaaaaagataaatat 4815978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 14065344 - 14065437
Alignment:
Q  83 tttgttatattattgttgtca-tagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||| |||| |||||| ||  |||| |||||| || ||| |||||||||| | |||||| |||||| ||||||||||||||||||||||    
T  14065344 tttgttataatattattgtcaatatgaaaagataaatctgatttgttgagtttgttatatttgaaaatcactaatattcatacttataatttta 14065437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 38004470 - 38004558
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||| |||||| ||||||||| ||| |||| |||| || |||| | | | ||||||||  |||||||||||||||    
T  38004470 ttatattattgttgtcattgaaaaagataaatatggtttgttgaatttgttatatttaaaagtaacaaatatctatacttataatttta 38004558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 53354122 - 53354034
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataat 170  Q
    |||||||||| ||||||||||| |||||| ||||||||| |||  |||||||| | ||||||| | ||||||||||  ||| |||||||    
T  53354122 tttgttatataattgttgtcattgaaaaagataaatatggttttgtgagtttgttgcatttgaaattcacaaatatctatatttataat 53354034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 10306854 - 10306901
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattga 130  Q
    |||||||||||||||||||||| |||||| ||||||||| ||| ||||    
T  10306854 tttgttatattattgttgtcatggaaaaaaataaatatggtttgttga 10306901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 27530741 - 27530780
Alignment:
Q  210 aaaaatatttaatagaaacattatattaatacttataatt 249  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  27530741 aaaaatatttaatagaaacattacattaatagttataatt 27530780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 17942526 - 17942568
Alignment:
Q  79 aatttttgttatattattgttgtcatagaaaaatataaatatg 121  Q
    ||||||||||||||||||||||| || |||||| |||||||||    
T  17942526 aatttttgttatattattgttgttattgaaaaagataaatatg 17942568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 21393165 - 21393088
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatat 157  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||    || ||||||||| ||||||||| | ||||||||||    
T  21393165 gaatttttgttatataattattgtcattgaaaaatataaata---gttgttgagtttgttacatttgaaagtcacaaatat 21393088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 121
Target Start/End: Original strand, 28808220 - 28808254
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatg 121  Q
    |||||||||| ||||||||||||||||||||||||    
T  28808220 ttatattattattgtcatagaaaaatataaatatg 28808254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 37441955 - 37441996
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaata 119  Q
    |||||||||||| |||||||||||||| |||||| |||||||    
T  37441955 gaatttttgttacattattgttgtcattgaaaaagataaata 37441996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 11876434 - 11876342
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||||| |||||| ||||||||| ||| ||||||||| ||||||||| | ||||||||||  |||||||| ||||||    
T  11876434 tttgttatattattgttgtcattgaaaaagataaatatgatttgttgagtttgatacatttgaaagtcacaaatatctatacttatcatttta 11876342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 11891441 - 11891349
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||||| |||||| ||||||||| ||| ||||||||| ||||||||| | ||||||||||  |||||||| ||||||    
T  11891441 tttgttatattattgttgtcattgaaaaagataaatatgatttgttgagtttgatacatttgaaagtcacaaatatctatacttatcatttta 11891349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 31267665 - 31267573
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||||||||| || |||||| ||||||| | ||| ||||| |||| ||| |||| |||||||||||||||||| ||||||||||    
T  31267665 tttgttatattattgttgttattgaaaaagataaatacggtttgttgagattgttacagttgaaaatcacaaatattcatacatataatttta 31267573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 28622288 - 28622195
Alignment:
Q  82 ttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||||||||||||| |||||||||||||||  ||| | ||||||| || || ||| | ||||||||||  |||||||||||||||    
T  28622288 ttttgttatattattgttgtcattgaaaaatataaatatagtttgtcgagtttgatatatatgaaagtcacaaatatctatacttataatttta 28622195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 12701581 - 12701669
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||| ||| || |||| |||| ||| ||||||||| ||||||||| | ||||||||||||||| ||||| |||||    
T  12701581 ttatattattgttgtcattgaataagataactatggtttgttgagtttgttacatttgaaattcacaaatattcatatttatattttta 12701669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 9014940 - 9014848
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||||| |||||| |||| |||| ||  ||||||||| |||||| || | ||||||| ||  |||||||||||||||    
T  9014940 tttgttatattattgttgtcattgaaaaagataactatggttggttgagtttgttacattcgaaagtcacaaacatctatacttataatttta 9014848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 38745198 - 38745107
Alignment:
Q  84 ttgttatattattgttgtcatagaaaaatataaatatgctttattgagttt-gtacatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||||||||||  |||||||||||||||| ||| ||| ||||  ||||||||| | | ||||||||  | |||||||||||||    
T  38745198 ttgttatattattgttgtcaatgaaaaatataaatatggtttgttgtgtttattacatttgaaagttacaaatatatacacttataatttta 38745107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 4438912 - 4438985
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgtacatttgagaatcacaaatat 157  Q
    |||| ||||||||||||||||| |||||||||||||||| ||| |||||| | ||| ||||| | ||||||||||    
T  4438912 tttggtatattattgttgtcattgaaaaatataaatatggtttcttgagtgt-tacttttgaaagtcacaaatat 4438985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 15920124 - 15920210
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttata 168  Q
    ||||||||||||||||||| ||   |||| ||||||||| ||| |||||||||| |||||||| | ||||||||||| ||| |||||    
T  15920124 tttgttatattattgttgtaatttgaaaagataaatatggtttgttgagtttgtaacatttgaaagtcacaaatatttatatttata 15920210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 7975901 - 7975826
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatat 157  Q
    ||||||||||||||| |  ||| |||||| ||||||||| ||| ||||||||| || |||||| ||||||||||||    
T  7975901 tttgttatattattgctcacattgaaaaagataaatatggtttgttgagtttgttaaatttgaaaatcacaaatat 7975826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 33300070 - 33300028
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatg 121  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  33300070 gaatttttgttatattattgttgtcattgaaaaa-ataaatatg 33300028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 6234812 - 6234874
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttga 144  Q
    ||||||||||||||||| ||||  ||||||||||||||  ||| ||||||||| |||||||||    
T  6234812 tttgttatattattgttatcattaaaaaatataaatatattttgttgagtttgttacatttga 6234874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 13004034 - 13004064
Alignment:
Q  209 aaaaaatatttaatagaaacattatattaat 239  Q
    |||||||||||||||||||||||||||||||    
T  13004034 aaaaaatatttaatagaaacattatattaat 13004064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 19341900 - 19341958
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    |||||||| |||||||||||||||||| |||||| ||||| ||| ||| |||| |||||    
T  19341900 gaatttttattatattattgttgtcattgaaaaagataaacatgatttgttgactttgt 19341958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 45553873 - 45553799
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaata 156  Q
    |||||||| ||||||||||||  |||||||||||| ||| ||| || |||||| ||||||||| | |||||||||    
T  45553873 tttgttatgttattgttgtcaatgaaaaatataaacatggtttcttaagtttgctacatttgaaagtcacaaata 45553799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 15899140 - 15899193
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    |||||||||||||  ||||||| |||||| ||||||||| ||| ||||||||||    
T  15899140 tttgttatattatcattgtcattgaaaaagataaatatgatttgttgagtttgt 15899193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 29133001 - 29132948
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    |||||||||||||||||||| | |||||| ||||||||  ||| ||||||||||    
T  29133001 tttgttatattattgttgtcgttgaaaaaaataaatattgtttgttgagtttgt 29132948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 32161999 - 32162031
Alignment:
Q  88 tatattattgttgtcatagaaaaatataaatat 120  Q
    ||||||||||||||||| |||||||||||||||    
T  32161999 tatattattgttgtcattgaaaaatataaatat 32162031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 38636342 - 38636250
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||||| |||||||||||||||| ||| |||| |||| ||||||||| | ||||||| ||  |||||||||||||||    
T  38636342 tttgttatattattgttgtcattgaaaaatataaatatgatttgttgaatttgttacatttgaaagtcacaaaaatctatacttataatttta 38636250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 13640989 - 13641065
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatatt 158  Q
    |||||||||||||||||||||| |||||| ||| ||||| ||| ||||||||| ||||||||| |||||||||||||    
T  13640989 tttgttatattattgttgtcattgaaaaagatagatatggtttgttgagtttgttacatttgaaaatcacaaatatt 13641065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 29357163 - 29357069
Alignment:
Q  81 tttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||||||  |||||| |||| |||| ||| ||||||||| ||||||||| | ||||| ||||  |||||||||||||||    
T  29357163 tttttgttatattattgttgtcactgaaaaagataagtatggtttgttgagtttgttacatttgaaagtcacacatatctatacttataatttta 29357069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 6025420 - 6025351
Alignment:
Q  88 tatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaata 156  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||||||| ||||||||| | |||||||||    
T  6025420 tatattattgttgtcattgaaaaatataaatatggtttgttgagtttgttacatttgaaagtcacaaata 6025351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 33797252 - 33797344
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||| ||||||| ||||||  |||||| ||||||||| ||| |||||||||| |||||||| ||||||||||||  |||||| ||||||||    
T  33797252 tttgttgtattattcttgtcactgaaaaagataaatatgatttgttgagtttgttacatttgaaaatcacaaatatctatacttttaatttta 33797344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 39436909 - 39436815
Alignment:
Q  82 ttttgttatattattgttgtca-tagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||||| ||  |||| ||||||||| ||| |||| ||||| | |||||| ||||||||||||| ||| |||||||||||    
T  39436909 ttttgttatattattgttgtcaatatcaaaaaataaatatggtttgttgaatttgttagatttgaaaatcacaaatatttatatttataatttta 39436815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 43140589 - 43140678
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataattt 172  Q
    |||||||||||||| || |||| |||||| ||||||||| ||| | |||||||| |||||||| ||||||||||||  |||||||||||||    
T  43140589 tttgttatattatt-ttatcattgaaaaagataaatatgatttgtggagtttgttacatttgaaaatcacaaatatctatacttataattt 43140678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 13703370 - 13703423
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    |||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||    
T  13703370 tttgttatattattgttgtcattgaaaaagataaatatgatttgttgagtttgt 13703423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 2475487 - 2475571
Alignment:
Q  91 attattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||| | |||||| ||||||||  ||| |||||||||| |||||||| | |||||| |||| |||||||||||||||    
T  2475487 attattgttgtcgttgaaaaaaataaatataatttgttgagtttgttacatttgaaagtcacaactatttatacttataatttta 2475571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 11373245 - 11373165
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcata 162  Q
    ||||||||||||||| |||||| |||||||||||||||  ||| ||||||||| || |||||| | |||||||||| ||||    
T  11373245 tttgttatattattgctgtcattgaaaaatataaatattgtttgttgagtttgttaaatttgaaagtcacaaatatccata 11373165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 13638417 - 13638325
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||| |||||||| |||||| ||||||||| ||| || |||| | || |||||| | ||||||||||  |||||||||||||||    
T  13638417 tttgttatattatagttgtcattgaaaaagataaatatggtttgtttagttcgttatatttgaaagtcacaaatatatatacttataatttta 13638325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 19346426 - 19346510
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataat 170  Q
    ||||||||||||| |||| || ||||| ||||||| ||| ||||||||| ||||||||| | ||||||||||  |||||||||||    
T  19346426 ttatattattgttttcattgacaaatagaaatatggtttgttgagtttgttacatttgaaagtcacaaatatatatacttataat 19346510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 38151535 - 38151623
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||||| || |||||||||||||||  ||| ||||||||| ||||||||| | ||||||||||  ||| ||||| |||||    
T  38151535 ttatattattgttgttattgaaaaatataaatatagtttgttgagtttgttacatttgaaagtcacaaatatctatatttatattttta 38151623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 39618333 - 39618403
Alignment:
Q  88 tatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatat 157  Q
    ||||||||||||||||| |||||||||||||||| |||  |||||||| ||||||||| |  |||||||||    
T  39618333 tatattattgttgtcattgaaaaatataaatatgatttgatgagtttgttacatttgaaagacacaaatat 39618403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 40358537 - 40358590
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    |||||||||||||||||||| | |||||||||||||||  ||| ||||||||||    
T  40358537 tttgttatattattgttgtcgttgaaaaatataaatattatttgttgagtttgt 40358590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 7806826 - 7806914
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||| ||||||||||| |||||| ||||||||| ||| ||||||||| ||| ||||| | | ||||||||| ||| |||||| ||||    
T  7806826 ttatatcattgttgtcattgaaaaagataaatatggtttgttgagtttgttacttttgaaagttacaaatatttatatttataaattta 7806914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 10040826 - 10040750
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaata-taaatatgctttattgagtttg-tacatttgagaatcacaaatat 157  Q
    |||| ||||||||||||||||| |||||| | |||||||| ||| ||||||||| ||||||||| | ||||||||||    
T  10040826 tttggtatattattgttgtcattgaaaaaaactaaatatggtttgttgagtttgttacatttgaaagtcacaaatat 10040750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 35093734 - 35093659
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatat 157  Q
    |||||||||||||||||||| | |||| | ||||||||| ||| ||||||||| ||||||||| | ||| ||||||    
T  35093734 tttgttatattattgttgtcgttgaaatagataaatatgatttgttgagtttgttacatttgaaagtcataaatat 35093659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 35096982 - 35096907
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatat 157  Q
    |||||||||||||||||||| | |||| | ||||||||| ||| ||||||||| ||||||||| | ||| ||||||    
T  35096982 tttgttatattattgttgtcgttgaaatagataaatatgatttgttgagtttgttacatttgaaagtcataaatat 35096907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 42851135 - 42851060
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatat 157  Q
    |||||||||||||||||| ||| |||||| || |||||| ||| ||||||||| || |||||| | ||||||||||    
T  42851135 tttgttatattattgttgccattgaaaaaaattaatatggtttgttgagtttgttatatttgaaagtcacaaatat 42851060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 35070946 - 35070884
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttga 144  Q
    |||||||||||||||||||| | |||| | ||||||||| ||| ||||||||| |||||||||    
T  35070946 tttgttatattattgttgtcgttgaaatagataaatatggtttgttgagtttgttacatttga 35070884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 13703069 - 13703122
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    ||||||| |||||||||||||| | |||| ||||||||| ||| ||||||||||    
T  13703069 tttgttaaattattgttgtcattgtaaaagataaatatggtttgttgagtttgt 13703122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 14625097 - 14625044
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    |||||||||| ||||||||||| |||||| || |||||| ||| ||||||||||    
T  14625097 tttgttatataattgttgtcattgaaaaagattaatatgatttgttgagtttgt 14625044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 35079605 - 35079552
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    |||||||||||||||||||| | |||||| ||||||||  ||| ||||||||||    
T  35079605 tttgttatattattgttgtcgttgaaaaagataaatatagtttgttgagtttgt 35079552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 4653802 - 4653715
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttt 173  Q
    |||||||||||||||||| |||||||||||||||| ||| ||||||||| ||||||| | | ||||||||||| || |||||||||||    
T  4653802 ttatattattgttgtcattgaaaaatataaatatggtttgttgagtttgttacatttaaaagtcacaaatatttatccttataatttt 4653715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 3086100 - 3086037
Alignment:
Q  82 ttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttga 144  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| |||||||||    
T  3086100 ttttgttatattattgttgtcattgaaaaagataaatatggtttattgagtttgttacatttga 3086037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 3156215 - 3156129
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataattt 172  Q
    |||||||||| ||||||| |||||| ||||||||| ||| |||||||||| |||||||| | ||||||||||| |||||||| ||||    
T  3156215 ttatattatttttgtcattgaaaaacataaatatggtttgttgagtttgttacatttgaaagtcacaaatattaatacttatgattt 3156129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 29689065 - 29688976
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatactta 166  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| ||| || | |||| ||||||| | | ||||||||||  |||||||    
T  29689065 gaatttttgttatatcattgttgtcattgaaaaatataaatatgttttgttaaatttgttacatttaaaattcacaaatatctatactta 29688976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 37317268 - 37317215
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||| |||||||    
T  37317268 tttgttatattattgttgtcattgaaaaatgtaaatatgatttattaagtttgt 37317215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 13241407 - 13241315
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||| | ||| |||||| || |||||| ||||||  |||||| |||||||| | |||||| |||| |||||||||||||||    
T  13241407 tttgttatattattgtcgccattgaaaaagattaatatggtttattaggtttgttacatttgaaagtcacaattattaatacttataatttta 13241315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 43020808 - 43020900
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||| ||||||| |||||| ||||||||| ||| ||||||||| || |||||| ||||| ||||||  || ||| ||||||||    
T  43020808 tttgttatattatttttgtcattgaaaaagataaatatggtttgttgagtttgttagatttgaaaatcataaatatctatgcttgtaatttta 43020900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 45479063 - 45478970
Alignment:
Q  83 tttgttatattattgttgtc-atagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||| |||  |||| ||||||||| ||| | ||||||| ||||||||| | ||||||||||  ||| |||||||||||    
T  45479063 tttgttatattattgttgtcaatatgaaaagataaatatggtttgtagagtttgttacatttgaaagtcacaaatatctatatttataatttta 45478970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 15716915 - 15717005
Alignment:
Q  85 tgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||||||||||  ||||  ||||| ||| ||| ||||||||| ||||||| | | ||||||||||   ||||||||||||||    
T  15716915 tgttatattattgttgtcattaaaaatgataaagatggtttgttgagtttgttacatttcaaagtcacaaatatatgtacttataatttta 15717005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 11067094 - 11067045
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    |||||||||| ||||||| |||||||||||||||| ||| || |||||||    
T  11067094 ttatattattattgtcattgaaaaatataaatatgatttgttaagtttgt 11067045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 27971572 - 27971531
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttatt 128  Q
    |||||||||||||||||| |||| ||||||||||| ||||||    
T  27971572 ttatattattgttgtcattgaaatatataaatatggtttatt 27971531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 38340168 - 38340261
Alignment:
Q  83 tttgttatattattgttgtc-atagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||||| |||  |||| ||||||||| ||  ||||||||| ||||||||| | ||| ||||||  ||||||| |||||||    
T  38340168 tttgttatattattgttgtcaatatgaaaagataaatatggttcgttgagtttgttacatttgaaagtcataaatatctatacttaaaatttta 38340261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 23252882 - 23252830
Alignment:
Q  84 ttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    ||||||||||||||||||||| |||||| ||||| ||| ||  ||||||||||    
T  23252882 ttgttatattattgttgtcattgaaaaagataaacatggttagttgagtttgt 23252830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 11736 - 11823
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||||| ||||| |||||||||| ||| |||||||||| |||||||| | ||||||||||  |||||||||||||||    
T  11736 ttatattattgttgtcattgaaaa-tataaatatggtttgttgagtttgttacatttgaaagtcacaaatatctatacttataatttta 11823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 39585096 - 39585193
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataattttagt 176  Q
    ||||||||||||| ||||||||||||| |||||  | ||||||| ||| ||||||||| ||||||||| | ||||||||||  |||||||||||||||||    
T  39585096 gaatttttgttatgttattgttgtcattgaaaa--aaaaatatggtttgttgagtttgttacatttgaaagtcacaaatatctatacttataattttagt 39585193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 1584613 - 1584520
Alignment:
Q  82 ttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||||||||| ||| ||||||||||| |||| ||| ||||||||| ||||||||| | |||| ||||   |||||||||||||||    
T  1584613 ttttgttatattattgttgccattgaaaaatataactatgatttgttgagtttgttacatttgaaagtcactaatacctatacttataatttta 1584520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 9666223 - 9666285
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttga 144  Q
    |||||||||||||||||||||| |||||| ||||||||| ||| ||||||||| |||||||||    
T  9666223 tttgttatattattgttgtcattgaaaaagataaatatggtttcttgagtttgttacatttga 9666285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 39178137 - 39178047
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataattt 172  Q
    |||||||||||| ||||||||| |||||| ||||||||| ||| ||  ||||| ||||||||| |||||||||||   |||||||||||||    
T  39178137 tttgttatattactgttgtcattgaaaaagataaatatggtttgtttggtttgttacatttgaaaatcacaaatacatatacttataattt 39178047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 11487225 - 11487144
Alignment:
Q  94 attgttgtcatagaaaaatataaatatgctttattgagttt-gtacatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||| |||||| ||||||||||||| |||||||| |||||||||| | | | ||||||  |||||||||||||||    
T  11487225 attgttgtcattgaaaaagataaatatgctttgttgagtttagtacatttgaaagtaaaaaatatctatacttataatttta 11487144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 9051076 - 9051164
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgag-tttgtacatttgagaatcacaaatattcatacttataat 170  Q
    ||||||||||| |||||||||| |||||||| ||||||| ||| ||||| ||  ||||||||| | ||||||||||  |||||||||||    
T  9051076 tttgttatattgttgttgtcattgaaaaataaaaatatgatttgttgagattattacatttgaaagtcacaaatatatatacttataat 9051164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 27175232 - 27175324
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||| ||||||| |||||| ||||||||| ||| ||||||||| ||||||| | | | | ||||||  |||||||||||||||    
T  27175232 tttgttatattattattgtcattgaaaaagataaatatggtttgttgagtttgttacatttaaaattaataaatatctatacttataatttta 27175324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 42522724 - 42522648
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatatt 158  Q
    ||||||||||||||||||| || ||||||| ||| ||||  |||||||||||| ||||||||| | |||||||||||    
T  42522724 tttgttatattattgttgttattgaaaaatgtaattatgggttattgagtttgttacatttgaaagtcacaaatatt 42522648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 28479630 - 28479705
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatat 157  Q
    ||||||||||||||| | | || |||||||||||||||| ||| ||||||||| ||||||||| | ||||||||||    
T  28479630 tttgttatattattgctataattgaaaaatataaatatggtttgttgagtttgttacatttgaaagtcacaaatat 28479705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 1134324 - 1134374
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatgctttatt 128  Q
    |||| ||| |||||||||||||||||| |||||||||||||||| ||||||    
T  1134324 gaatatttattatattattgttgtcattgaaaaatataaatatgatttatt 1134374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 41613439 - 41613532
Alignment:
Q  83 tttgttatattattgttgtca-tagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    |||||||||||||||| |||| ||  |||| ||||||||| ||| |||||||||| |||||| | ||||| ||||||  |||||||||||||||    
T  41613439 tttgttatattattgtagtcaatatgaaaagataaatatggtttgttgagtttgttacatttaaaaatcataaatatctatacttataatttta 41613532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 1592165 - 1592232
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatca 150  Q
    |||||||| |||||||||| || |||||||||||||||| ||| ||||||||| ||||||||| |||||    
T  1592165 tttgttat-ttattgttgtaattgaaaaatataaatatggtttgttgagtttgttacatttgaaaatca 1592232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 17822186 - 17822135
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagttt 134  Q
    |||||||||||||||||||||| ||||||||| |||||| ||| | ||||||    
T  17822186 tttgttatattattgttgtcattgaaaaatatgaatatgatttgtagagttt 17822135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 34450051 - 34450013
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatg 121  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  34450051 tttgttatattattgttgtcattgaaaaagataaatatg 34450013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 42422671 - 42422618
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    ||||||||||||||||| |||| |||||| |||||| || ||| ||||||||||    
T  42422671 tttgttatattattgttctcattgaaaaagataaatttggtttgttgagtttgt 42422618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 1585765 - 1585816
Alignment:
Q  84 ttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt 136  Q
    ||||||||||||||||| | | ||||| |||||||||| ||||||||||||||    
T  1585765 ttgttatattattgttggctttgaaaa-tataaatatggtttattgagtttgt 1585816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 7734162 - 7734074
Alignment:
Q  87 ttatattattgttgtcatagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||| ||||| |||||| |||||  |||||||||  || |||||||||| |||||| | ||||| ||||||  |||||||||||||||    
T  7734162 ttataatattgatgtcattgaaaatgataaatatggattgttgagtttgttacatttaaaaatcataaatatctatacttataatttta 7734074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 43008405 - 43008314
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||||||| |||| |||||| ||||||||| ||| || |||||| || |||||  | ||||||||||  |||||| ||||||||    
T  43008405 tttgttatattattgttttcat-gaaaaagataaatatgatttgttaagtttgttatatttggaagtcacaaatatctatacttttaatttta 43008314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 11573438 - 11573525
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataa 169  Q
    |||||||||||||||||||| | |||||||||||||||  ||| ||||||||| ||||||| | | ||||||||||  ||||||||||    
T  11573438 tttgttatattattgttgtcgttgaaaaatataaatataatttgttgagtttgttacatttaaaagtcacaaatatctatacttataa 11573525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 22793297 - 22793206
Alignment:
Q  84 ttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||  ||||||| |||||| ||||||||  ||| ||||||||| ||||||||| | |||||| |||| |||||||||||||||    
T  22793297 ttgttatattatatttgtcattgaaaaagataaatattgtttgttgagtttgttacatttgaaagtcacaagtatttatacttataatttta 22793206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 23659307 - 23659396
Alignment:
Q  87 ttatattattgttgtca-tagaaaaatataaatatgctttattgagtttgt-acatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||||||||| || ||||| ||||||||| ||| |||||||||| |||||| | | ||||||||||  |||||||||||||||    
T  23659307 ttatattattgttgtcaatataaaaagataaatatggtttgttgagtttgttacatttaaaagtcacaaatatctatacttataatttta 23659396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 2536574 - 2536494
Alignment:
Q  78 gaatttttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatat 157  Q
    |||||||||||| |||||||||||||| |||||| ||||||||  ||| ||||||||| ||||||| | | ||||||||||    
T  2536574 gaatttttgttacattattgttgtcattgaaaaagataaatattgtttgttgagtttgttacattttaaagtcacaaatat 2536494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 8174542 - 8174455
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataat 170  Q
    ||||||||||||||||||||||  ||||||||||||||| ||| || |||||| ||||||||| | ||||||||||  ||| |||||||    
T  8174542 tttgttatattattgttgtcatttaaaaatataaatatgattt-tttagtttgttacatttgaaagtcacaaatatatatatttataat 8174455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 15926187 - 15926111
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatatt 158  Q
    |||||||||||||| ||||||| |||||| ||||||| |  || ||| ||||| ||||||||| | |||||||||||    
T  15926187 tttgttatattattattgtcattgaaaaagataaataaggattgttgtgtttgttacatttgaaagtcacaaatatt 15926111  T

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Target: scaffold0013 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 97075 - 97137
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttga 144  Q
    |||||||||||||||||||||| |||||| ||||||||  ||| ||||||||| |||||||||    
T  97075 tttgttatattattgttgtcattgaaaaagataaatatattttgttgagtttgttacatttga 97137  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 36854 - 36946
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttgagaatcacaaatattcatacttataatttta 174  Q
    ||||||||||| |||||||||  |||||| ||||||   |||| ||||||||| ||||||| | | ||||||||||| ||| |||||||||||    
T  36854 tttgttatattgttgttgtcaatgaaaaagataaatcatctttgttgagtttgttacatttaaaagtcacaaatatttatatttataatttta 36946  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 226401 - 226339
Alignment:
Q  83 tttgttatattattgttgtcatagaaaaatataaatatgctttattgagtttg-tacatttga 144  Q
    ||||||| |||||||||||||| |||||| ||||||||| ||| |||| |||| |||||||||    
T  226401 tttgttacattattgttgtcattgaaaaaaataaatatgatttgttgaatttgttacatttga 226339  T

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