View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531_1D_high_5 (Length: 557)
Name: NF1531_1D_high_5
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 33 - 541
Target Start/End: Complemental strand, 42944712 - 42944205
Alignment:
| Q |
33 |
ttattgtactaagaatcaaagatattatagcagtaggaaaaactgttggaagatgatttcagggaccttcaacatgtgtgcaagtttttctgacatatgg |
132 |
Q |
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| T |
42944712 |
ttattgttctaagaatcaaagatattatagcagtaggaaaaactgttggaagatgatttcagggaccttcaacatgtgtgcaagtttttctgacatatgg |
42944613 |
T |
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| Q |
133 |
tatagcatgaagtctgaatgcttgttgactgtaaatagattgtaaggaaattatgcacaactagttcaatactttggtgacattttgtgttcagaaatag |
232 |
Q |
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| T |
42944612 |
tatagcatgaagtctgaatgtttgttgtctgtaaatagattgtaaggaaattatgcacaactagttcgatactttggtgacattttgtgttcagaaatag |
42944513 |
T |
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| Q |
233 |
aagagaaaaacttgcttcattttttcttacttttctttgttacattaaatctctatttcttaaggccattctttatcatctgaaattaactcaattatgt |
332 |
Q |
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| T |
42944512 |
aagagaaaaacttgcttcattttttcttacttttctttgttacattacatctctatttcttaaggccattctttatcatctgaaattaactcaattatgt |
42944413 |
T |
|
| Q |
333 |
tttagaacaaaaataagttgttaattgtatgcttcaaaaagtttaaagtttgtcctcggtctnnnnnnnntcaatttcaggaatcaaattgaggactatt |
432 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42944412 |
tttagaacaaaattaagttgttaattgtatgcttcaaaaagtttaaagtttgtcctcggtcgaaaaaaaatcaatttcaggaatcaaattgaggactatt |
42944313 |
T |
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| Q |
433 |
ttgtcgtggtgacaccatcaatacagctaaaactttggaaccctttattctttcacagtactattgtctcttgtcaatcaagcaaggcttgctacaggtg |
532 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42944312 |
ttgtcgtggtgacaccatcaatacagctaaaacttt-gaaccctttattctttcacagtactattgtctcttgtcaatcaagcaaggcttactacaggtg |
42944214 |
T |
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| Q |
533 |
ctttctgat |
541 |
Q |
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| T |
42944213 |
ctttctgat |
42944205 |
T |
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