View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1531_1D_high_6 (Length: 524)

Name: NF1531_1D_high_6
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1531_1D_high_6
NF1531_1D_high_6
[»] chr8 (2 HSPs)
chr8 (183-511)||(12171101-12171428)
chr8 (183-511)||(12415529-12415856)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 183 - 511
Target Start/End: Original strand, 12171101 - 12171428
Alignment:
Q  183 tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg 279  Q
    |||||||||| |||||||||||| | |||||||||| |||||||||||||||||| ||||||||  ||||||||| ||| |||| || || |||| |||     
T  12171101 tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- 12171196  T
Q  280 tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca 379  Q
      ||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  12171197 --tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca 12171294  T
Q  380 actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt 477  Q
    |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12171295 actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt 12171394  T
Q  478 gttttcactggtgattctttcctatgatgtccat 511  Q
     ||||||||||||||| |||||||||||||||||    
T  12171395 attttcactggtgattatttcctatgatgtccat 12171428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 183 - 511
Target Start/End: Original strand, 12415529 - 12415856
Alignment:
Q  183 tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg 279  Q
    |||||||||| |||||||||||| | |||||||||| |||||||||||||||||| ||||||||  ||||||||| ||| |||| || || |||| |||     
T  12415529 tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- 12415624  T
Q  280 tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca 379  Q
      ||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  12415625 --tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca 12415722  T
Q  380 actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt 477  Q
    |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12415723 actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt 12415822  T
Q  478 gttttcactggtgattctttcctatgatgtccat 511  Q
     ||||||||||||||| |||||||||||||||||    
T  12415823 attttcactggtgattatttcctatgatgtccat 12415856  T

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