View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1531_1D_low_14 (Length: 424)
Name: NF1531_1D_low_14
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 51 - 419
Target Start/End: Complemental strand, 30711533 - 30711165
Alignment:
| Q |
51 |
gtttggtgtttggatcattaactaatgaaatagaatagagaggaatgtgagtgccgcgttttgtatggtgccttcatttttagaataaagtcaaactttg |
150 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30711533 |
gtttggtctttggatcattaactaatgaaatagaatagagaggaatgtgagtgccgcgttttgtatggtgccttcatttttagaatgaagtcaaactttg |
30711434 |
T |
|
| Q |
151 |
gcatttcgtcatcatgaaccaatcaannnnnnnnccttattggcctaaggctacatatagcatataaccgttaccaggcactgccttcttttttccttgc |
250 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30711433 |
gcatttcgtcatcatgaaccaatcaattttttttccttattggcctaaggctacatatagcatataaccgttaccaggcactgccttcttttttccttgc |
30711334 |
T |
|
| Q |
251 |
acacacactgtactgtggctgtggggactgaggagttcctttttcttttggagtagtatgtggcaaaagctttattttaaatagttttgatgcagtgata |
350 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30711333 |
acatacactgtactgtggctgtggggactgaggagttcctttttcttttggcgtagtatgtggcaaaagctttattttaaatagttttgatgcagtgata |
30711234 |
T |
|
| Q |
351 |
attaagttttcgtttggattgacgatggaattgacatgaactaccgtgtatttggttgaagttacactt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30711233 |
attaagttttcgtttggattgacgatggaattgacatgaactaccgtgtatttggttgaagttacactt |
30711165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 39370618 - 39370563
Alignment:
| Q |
5 |
ttgtagaatatggtttgttatctacttcaaatttaggctttccaacgtttggtgtt |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39370618 |
ttgtagaatatggtttgttatctacttcaaatttaggcttctcaacgtttggtgtt |
39370563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University