View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1531_1D_low_17 (Length: 359)
Name: NF1531_1D_low_17
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 6 - 335
Target Start/End: Complemental strand, 11827770 - 11827432
Alignment:
| Q |
6 |
actgagatgaagttcgataaagggttgggccttctttgcaattttttctatatagactctctttaaacaaagtgttgatatatacac---------cccc |
96 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
11827770 |
actgggatgaagtccgataaagggttgggccttcattgcaattttttctatatagactctctttaaacaaagtgttgatataaacacccgccacctccca |
11827671 |
T |
|
| Q |
97 |
ggnnnnnnnnngtatgggtccctacgggaatggatccaaagtcaccgcaccctcgacctatgccttgggccggtcctgctttgtcccacatacaagctgt |
196 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
11827670 |
aaaaaaaaaaaatatgggtccctgcgggaatggatccaaagtcaccgcacccccgacctatgccttggtccggccctgctttgtcccacatacaaactgt |
11827571 |
T |
|
| Q |
197 |
ctaaaatatcacacttctttcaaaataaaaatgcatatcacactggttttgctttatannnnnnncagcaatgatatttggacacgtcaaatttttatat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
11827570 |
ctaaaatatcacacttctttcaaaataaaaatgcatatcacattgattttcctttatatttttttcaacaatgatatttggacacatcaaatttttatat |
11827471 |
T |
|
| Q |
297 |
atccattcatcacctcattttctctttatctatattttc |
335 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
11827470 |
atccattcatcactttattttctctttatctatattttc |
11827432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University