View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531_1D_low_21 (Length: 332)
Name: NF1531_1D_low_21
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 9382283 - 9382583
Alignment:
| Q |
10 |
aaaagaaagaagtagcgataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaag |
109 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9382283 |
aaaagaaggaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaag |
9382382 |
T |
|
| Q |
110 |
caatatatcaagaaagtctctgaattcagcaccctgctcacccttattttccttccttcctttgttcttcctcaactcttctcttttactaataatcctt |
209 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
9382383 |
caatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttgttcttcctcaactcttctctcttagtaataatcctt |
9382482 |
T |
|
| Q |
210 |
tccaccaacgtatcaaacctcataaacaaatcctctatcctcttcccaaacccttgcaaatcaagtttcttaaacaaccaaataaaatccgacacattaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9382483 |
tccaccaacgtatcaaacctcataaacaaatcctctatcctcttcccaaacccttgcaaatcaagtttcttaaacaaccaaataaaatccgacacattaa |
9382582 |
T |
|
| Q |
310 |
a |
310 |
Q |
| |
|
| |
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| T |
9382583 |
a |
9382583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 9399752 - 9400052
Alignment:
| Q |
10 |
aaaagaaagaagtagcgataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaag |
109 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9399752 |
aaaagaaagaagtagagataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcggcacaatcaag |
9399851 |
T |
|
| Q |
110 |
caatatatcaagaaagtctctgaattcagcaccctgctcacccttattttccttccttcctttgttcttcctcaactcttctcttttactaataatcctt |
209 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9399852 |
caatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttgttcttcctcaactcttctcttttactaataatcctt |
9399951 |
T |
|
| Q |
210 |
tccaccaacgtatcaaacctcataaacaaatcctctatcctcttcccaaacccttgcaaatcaagtttcttaaacaaccaaataaaatccgacacattaa |
309 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9399952 |
tccaccaatgtatcaaacctcataaacaaatcctctatcctcttcccaaacccttgcaaatcaagtttcttaaacaaccaaataaaatccgatacattaa |
9400051 |
T |
|
| Q |
310 |
a |
310 |
Q |
| |
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| |
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| T |
9400052 |
a |
9400052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 194 - 310
Target Start/End: Complemental strand, 23243770 - 23243654
Alignment:
| Q |
194 |
tttactaataatcctttccaccaacgtatcaaacctcataaacaaatcctctatcctcttcccaaacccttgcaaatcaagtttcttaaacaaccaaata |
293 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| | | |||||| || ||||||||||||||||||||||| || |||| ||||||||||||||||||| |
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| T |
23243770 |
tttacaaataatcctttccaccaacgtatcaaacttaaaaaacaagtcttctatcctcttcccaaacccttggaagtcaactttcttaaacaaccaaata |
23243671 |
T |
|
| Q |
294 |
aaatccgacacattaaa |
310 |
Q |
| |
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|||||||| |||||||| |
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|
| T |
23243670 |
aaatccgaaacattaaa |
23243654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 23243915 - 23243822
Alignment:
| Q |
37 |
ttaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaagcaatatatcaagaaagtctct |
130 |
Q |
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||||||||||||||||||| | |||||||||||||| ||| || || || ||| |||||| || ||||||| | ||||||||||||||||| |
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| T |
23243915 |
ttaccataatcaaggccttaacgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctct |
23243822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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