View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1531_1D_low_22 (Length: 328)
Name: NF1531_1D_low_22
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 38869318 - 38869630
Alignment:
| Q |
18 |
ataaaaaagaaggtaacaaatcaggtgaatatgcttaccataaattatttaactccaacaccccaaatttaaaataatgaatgaacaaatattttgtact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38869318 |
ataaaaaagaaggtaacaaatcaggtgaatatgcttaccataaattatttaactccaacaccccaaatttaaaataatgaatgaacaaatattttgtact |
38869417 |
T |
|
| Q |
118 |
tagcattcaaattcgttcttatcatttaaaatcacaatgcagaaacgtcattgatcatatatttgaagtgcatcaaaaacagaaaacagattcaatgaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38869418 |
tagcattcaaattcgttcttatcatttaaaatcataatgcagaaacg-cattgatcatatatttgaagtgcatcaaaaacagaaaacagattcaacgaga |
38869516 |
T |
|
| Q |
218 |
agatagacaacattcaatggaaaataattttag--------aaagnnnnnnnnngagagagaaaatactgaagttttggacgtcttccataatcttcctg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38869517 |
agatagacaacattcaatggaaaataattttagaaaaaaaaaaaaaaaaaaaaagagagagaaaatactgaagttttggacgtcttccataatcttcctg |
38869616 |
T |
|
| Q |
310 |
atgtccatctcatt |
323 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
38869617 |
atgtccatttcatt |
38869630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University