View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531_1D_low_25 (Length: 305)
Name: NF1531_1D_low_25
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 293
Target Start/End: Original strand, 19475250 - 19475533
Alignment:
| Q |
7 |
tttggtgttgggagtaaagttcaagctgcatcatcaggacgtgaaatgactacttcgaaggtcaacgctaatctatttattcaagctatccacacctgaa |
106 |
Q |
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| T |
19475250 |
tttgatgttgggagtaaggttcaagc---atcatcaggacatgaaatgacttcttcgcaggtcaacgctaatatatttattcaagctatccacacctgaa |
19475346 |
T |
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| Q |
107 |
taaagtcaccatgacaatgtctttgaatcaaacatgatactgttttagtgtagataaacatgaaacaaaaaccacatgcagaacttgaatttgtcgaaca |
206 |
Q |
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| T |
19475347 |
taaagtaaccatgacaatgtctttgaatcaaacatgatattgttttagtgtagataaacatgtaacaaaaaccacatgcagagcttgaatttgtcgaaca |
19475446 |
T |
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| Q |
207 |
tgaattcgttgaatatgataatttagagataccttcggtaacaatattatcaatgaattcgatagtaatttgcagggcatgttgaat |
293 |
Q |
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| T |
19475447 |
tgaattcgttgaaaatgataatttagagataccttcagtaacaatattatcaatgaattcgatagtaatttgcaggacatgttgaat |
19475533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 26628512 - 26628570
Alignment:
| Q |
84 |
tattcaagctatccacacctgaataaagtcaccatgacaatgtctttgaatcaaacatg |
142 |
Q |
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| T |
26628512 |
tattcaagctaaccacacctgaatacaatcaccatgatagtgtatttgaatcaaacatg |
26628570 |
T |
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