View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531_1D_low_3 (Length: 1135)
Name: NF1531_1D_low_3
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 841; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 841; E-Value: 0
Query Start/End: Original strand, 120 - 1116
Target Start/End: Complemental strand, 50493156 - 50492173
Alignment:
| Q |
120 |
atagttccatgagtcacaatatcaaatcaaaatgataaaaagcgtaaatggtacttaactttgggtgattcccattttctaattattcatgaattccttt |
219 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
50493156 |
atagtttcatgagtcacaatatcaaatcaaaatgataaaaagcgtaaatggtacttaactttgactgattcccattttttaattattcatgaattccttt |
50493057 |
T |
|
| Q |
220 |
cgatgctaactttgagttagttttaatactcttgaaaaatattcttaaaactatttagatattgaactcgcaagtccttcaaaccataattctacaaact |
319 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50493056 |
cgatgctaactttaagttagttttaatactcttgaaaaatattcttaaaactatttagatattgaactcgcaagaccttcaaaccataattctacaaact |
50492957 |
T |
|
| Q |
320 |
ggtctaaaaggaacaaaattggttgttcattttaaatagaatccttcaacaaagactttcttgcaaattttaataaccttaacatgaataagaaaattta |
419 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50492956 |
ggtctaaaaggaacaaaattgtttgttcattttaaatagaatccttcaacaaagactttcttgcaaattttaataaccttaacatgaataagcaaattta |
50492857 |
T |
|
| Q |
420 |
ttttcaaaattgtttttagagcacgtcaaaagttctaacactgtcaatcaattttataaattgcgtcaaaagtttttacaccatcaatcaataacaaata |
519 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50492856 |
ttttcaaaattgtttttatagcacgtcaaaagttccaacactgtcaatcaattttataaattgcgtcaaaagtttttacaccattaatcaataacaaatg |
50492757 |
T |
|
| Q |
520 |
tttgactattaaaaacgctcaacttttatcataactatttttaaagtcacacgtaattgattggatgcacttaaacaacttttgagttttgactacttaa |
619 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| |||| |
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| T |
50492756 |
tttgactattaaaaacgctcaacttttatcataactatttttaaagtcacacgtaattgattgcatacatttaaacaacttttgagttttgactagttaa |
50492657 |
T |
|
| Q |
620 |
agcgacatcattttctactttttctttgtttagaagaaaaacttaagttatgcaaaaacattttcaaaagttcagttgagagcgagcaaaacgtgagggg |
719 |
Q |
| |
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|| ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50492656 |
agtgacatcattttctactttttctttgattagaagaaaaacttaagttatacagggacattttcgaaagttcagttgagagcgagcaaaacgtgagggg |
50492557 |
T |
|
| Q |
720 |
agaagagcagttttcaagctgcaaagcccaagaacacatgcttctatnnnnnnnnnggccaatgatttggcgcaacctggaccgggtatcggaagcacgc |
819 |
Q |
| |
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| T |
50492556 |
agaagagcagttttcaagctgcaaagcccaagaacacatgcttctat-------------aatgatttggcgcaacctggaccgggtatcggaagcacgc |
50492470 |
T |
|
| Q |
820 |
tccggcccaacaatagaattggcgccaatgttttcgcgccaaaatcagtgaaccccaccagcacccattgataaaccctcggaagttgcaaccctaaaca |
919 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50492469 |
tccggcccaacaatagaattggcgccaatgttttcgcgccaaaatcagtgaaccccaccagcacccattgataacccctcggaagttgcaaccctaaaca |
50492370 |
T |
|
| Q |
920 |
cacaatcgaattcttcagagcaaaactgaaattgaaacacttcagagctagaagagaagaagcgaagaatcatggatccagaaaatcctgcatcaactcc |
1019 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50492369 |
cacaatcgaattattcagagcgaaactgaaattgaaacacttcagagctagaagagaagaagtgaagaatcatggatccagaaaatcctgcatcaactcc |
50492270 |
T |
|
| Q |
1020 |
cgattcaccaacctcaccatccgccggtttcaacactgatcaacttcctcacactcacaccagccgcgcatctgaagacgacgaagcttccgttgat |
1116 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50492269 |
cgattcaccaacttcaccatccgccggtttcaacactgatcaacttcctcacactcacaccagccgcgcatctgaagacgacgaagcttccgttgat |
50492173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 50493223 - 50493157
Alignment:
| Q |
25 |
ttaactatattacagattgcacaatgtgcggccnnnnnnnctaacgtacactgtacgaatgatatat |
91 |
Q |
| |
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|
| T |
50493223 |
ttaactatattacagattgcacaatgtgcggccaaaaaaactaacgtacactgtacgaatgatatat |
50493157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 677 - 734
Target Start/End: Complemental strand, 21474813 - 21474756
Alignment:
| Q |
677 |
acattttcaaaagttcagttgagagcgagcaaaacgtgaggggagaagagcagttttc |
734 |
Q |
| |
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| T |
21474813 |
acattttcgaaagttcagttggaagcgagcaaaatgtgatgggagaagatcaattttc |
21474756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 678 - 735
Target Start/End: Complemental strand, 23656174 - 23656117
Alignment:
| Q |
678 |
cattttcaaaagttcagttgagagcgagcaaaacgtgaggggagaagagcagttttca |
735 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| || ||||||||| |||||| |
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|
| T |
23656174 |
cattttcgaaagttcagttgagagcgagcaaaacgtgatggaagaagagcaattttca |
23656117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 678 - 735
Target Start/End: Original strand, 23802396 - 23802453
Alignment:
| Q |
678 |
cattttcaaaagttcagttgagagcgagcaaaacgtgaggggagaagagcagttttca |
735 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| || ||||||||| |||||| |
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| T |
23802396 |
cattttcgaaagttcagttgagagcgagcaaaacgtgatggaagaagagcaattttca |
23802453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 679 - 734
Target Start/End: Original strand, 27318699 - 27318754
Alignment:
| Q |
679 |
attttcaaaagttcagttgagagcgagcaaaacgtgaggggagaagagcagttttc |
734 |
Q |
| |
|
|||||||||||| || |||| || ||||||||||||| |||||||||||| ||||| |
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|
| T |
27318699 |
attttcaaaagtacaattgaaagtgagcaaaacgtgatgggagaagagcaattttc |
27318754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 677 - 730
Target Start/End: Complemental strand, 14464122 - 14464069
Alignment:
| Q |
677 |
acattttcaaaagttcagttgagagcgagcaaaacgtgaggggagaagagcagt |
730 |
Q |
| |
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|||||||| |||||||||||| |||||||||||| || |||||||||||||| |
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|
| T |
14464122 |
acattttcgaaagttcagttgggagcgagcaaaaattgttgggagaagagcagt |
14464069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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