View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531_1D_low_31 (Length: 276)
Name: NF1531_1D_low_31
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 46240134 - 46239893
Alignment:
| Q |
20 |
catcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| |
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| T |
46240134 |
catcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactatttccaggacacactcttttaag |
46240035 |
T |
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| Q |
120 |
ttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46240034 |
ttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgtttagctttccacgccctacctttggtg |
46239935 |
T |
|
| Q |
220 |
atacccactgcatgattcgtcctcatgtcatccatgatgtcc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239934 |
atacccactgcatgattcgtcctcatgtcatccatgatgtcc |
46239893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 23541528 - 23541295
Alignment:
| Q |
20 |
catcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaag |
119 |
Q |
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|||||||||||||||| ||||| |||||||||||||| | | ||| ||| ||||| ||| | || |||| | ||||||| | ||| |||||||| |
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| T |
23541528 |
catcaaaacaaaagtagaaagaaccaaacctgggttggattgatggggttggtctatccacatttatcttcacattatttccagcattcacccttttaag |
23541429 |
T |
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| Q |
120 |
ttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtg |
219 |
Q |
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| T |
23541428 |
ttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccctacccattgta |
23541329 |
T |
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| Q |
220 |
atacccactgcatgattcgtcctcatgtcatcca |
253 |
Q |
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| T |
23541328 |
atacccactgcatggtttgtcctcatgtcatcca |
23541295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 3437345 - 3437574
Alignment:
| Q |
20 |
catcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
3437345 |
catcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactgtttccaggacacactcttttaag |
3437444 |
T |
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| Q |
120 |
ttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437445 |
ttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccc----------- |
3437533 |
T |
|
| Q |
220 |
atacccactgcatgattcgtcctcatgtcatccatgatgtcc |
261 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3437534 |
-tacccactgcatgattcgtcctcatgtcatcgatgatgtcc |
3437574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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