View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1531_1D_low_38 (Length: 252)
Name: NF1531_1D_low_38
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_38 |
 | |
|
| [»] scaffold0300 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
| [»] scaffold0121 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 3437324 - 3437088
Alignment:
| Q |
1 |
aatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3437324 |
aatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgaccagt |
3437225 |
T |
|
| Q |
101 |
actttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437224 |
actttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagata |
3437125 |
T |
|
| Q |
201 |
tgtattcatatcagatcagcagaaggtaagtgatgtc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3437124 |
tgtattcatatcagatcagcagaaggtaagtgttgtc |
3437088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 14799077 - 14798952
Alignment:
| Q |
6 |
atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt |
105 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| | | | ||||| || ||||| |||||||| || |||||| |
|
|
| T |
14799077 |
atgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaattgttggtggctgtaggaagagatccaaatgatcaatacttt |
14798978 |
T |
|
| Q |
106 |
cctcttgcatttggcattgttgaaac |
131 |
Q |
| |
|
||| | || ||||| |||||||||| |
|
|
| T |
14798977 |
cctttagcttttggtgttgttgaaac |
14798952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 15246069 - 15245944
Alignment:
| Q |
6 |
atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt |
105 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| | | | ||||| || ||||| |||||||| || |||||| |
|
|
| T |
15246069 |
atgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaattgttggtggctgtaggaagagatccaaatgatcaatacttt |
15245970 |
T |
|
| Q |
106 |
cctcttgcatttggcattgttgaaac |
131 |
Q |
| |
|
||| | || ||||| |||||||||| |
|
|
| T |
15245969 |
cctttagcttttggtgttgttgaaac |
15245944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 46240155 - 46240383
Alignment:
| Q |
1 |
aatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46240155 |
aatggatgtaggccatttattggggttgatggttgtcatctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgaccagt |
46240254 |
T |
|
| Q |
101 |
actttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240255 |
actttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagata |
46240354 |
T |
|
| Q |
201 |
tgtattcatatcagatcagcagaaggtaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
46240355 |
tgtattcatatcagatcagcagaaggtaa |
46240383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23541549 - 23541775
Alignment:
| Q |
1 |
aatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagt |
100 |
Q |
| |
|
||||| ||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||||||| || || | ||||||||| |||||||||||||| | |
|
|
| T |
23541549 |
aatgggtgtagaccatttgttggggtagatggatgtcatttaaagacaaagtatgggggtcaacttctaatagttgttggtagggacccaaatgaccaat |
23541648 |
T |
|
| Q |
101 |
actttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagata |
200 |
Q |
| |
|
| ||||| | |||||||| || || ||||| |||| |||| ||||||||| |||||||||||| | | ||||||||||||| | |||| ||||| |
|
|
| T |
23541649 |
attttccattggcatttggaatagtagaaacaaagtgtagggaaagctggaaatggttcatggagcttttaatggatgacattggaagggataggagata |
23541748 |
T |
|
| Q |
201 |
tgtattcatatcagatcagcagaaggt |
227 |
Q |
| |
|
||| |||||||||||||| |||||||| |
|
|
| T |
23541749 |
tgtcttcatatcagatcaacagaaggt |
23541775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 228
Target Start/End: Complemental strand, 30038307 - 30038134
Alignment:
| Q |
55 |
gggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagt |
154 |
Q |
| |
|
||||||||||| | |||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || || ||||| | |
|
|
| T |
30038307 |
gggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttggaaat |
30038208 |
T |
|
| Q |
155 |
ggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
228 |
Q |
| |
|
|||||| | |||||||| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
30038207 |
ggttcacgcagttgctgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta |
30038134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 228
Target Start/End: Original strand, 29878233 - 29878409
Alignment:
| Q |
52 |
tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga |
151 |
Q |
| |
|
|||||||| ||||| | |||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || ||| |||| |
|
|
| T |
29878233 |
tatggggggcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga |
29878332 |
T |
|
| Q |
152 |
agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
228 |
Q |
| |
|
| |||||||| |||||||| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
29878333 |
aatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta |
29878409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 3921357 - 3921199
Alignment:
| Q |
70 |
attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc |
169 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || ||| ||||| |||||||| |||||| |
|
|
| T |
3921357 |
attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatacagttgc |
3921258 |
T |
|
| Q |
170 |
tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
228 |
Q |
| |
|
|| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
3921257 |
tgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta |
3921199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 228
Target Start/End: Original strand, 6869027 - 6869201
Alignment:
| Q |
52 |
tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga |
151 |
Q |
| |
|
|||||||| ||||| | |||||||| || |||||||||||||||||||||||||| || || ||||| | |||||||||||||||| || ||| |||| |
|
|
| T |
6869027 |
tatgggggccaactgttgattgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga |
6869126 |
T |
|
| Q |
152 |
agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
228 |
Q |
| |
|
| ||||||||| |||||||| |||| || || || ||||| |||| |||| |||||||||||||| || |||||| |
|
|
| T |
6869127 |
aatggttcatgcagttgctgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta |
6869201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 228
Target Start/End: Complemental strand, 4497377 - 4497222
Alignment:
| Q |
73 |
gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt |
172 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| ||| | | |||||||||||| ||||| |||||| || || |
|
|
| T |
4497377 |
gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggcaagctggaaatggtttatggagctgttga |
4497278 |
T |
|
| Q |
173 |
tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
228 |
Q |
| |
|
|| ||||||| || || |||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
4497277 |
tgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta |
4497222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 11318404 - 11318291
Alignment:
| Q |
6 |
atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt |
105 |
Q |
| |
|
|||||| || ||||| || |||||||| |||||||||||||| | ||||| || ||||| || ||||| |||| |||||||||||||| || || ||| |
|
|
| T |
11318404 |
atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatgatcaatatttt |
11318305 |
T |
|
| Q |
106 |
cctcttgcatttgg |
119 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
11318304 |
cctttagcatttgg |
11318291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 228
Target Start/End: Original strand, 18134 - 18289
Alignment:
| Q |
73 |
gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt |
172 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| || | | |||||||||||| ||||| |||||| || || |
|
|
| T |
18134 |
gctgttggaagggaccccaatgaccagtattttcccctggcctttggtgttgttgaagtagaaagtaaggcaagctggaaatggtttatggagctgttga |
18233 |
T |
|
| Q |
173 |
tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
228 |
Q |
| |
|
|| ||||||| || || || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
18234 |
tgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta |
18289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 228
Target Start/End: Complemental strand, 24676197 - 24676042
Alignment:
| Q |
73 |
gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt |
172 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| || | | |||||||||||| ||||| |||||| || || |
|
|
| T |
24676197 |
gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagtagaaagtaaggcaagctggaaatggtttatggagctgttga |
24676098 |
T |
|
| Q |
173 |
tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
228 |
Q |
| |
|
|| ||||||| || || || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
24676097 |
tgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta |
24676042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 40153 - 40053
Alignment:
| Q |
7 |
tgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc |
106 |
Q |
| |
|
|||||||| ||||| || |||||||| |||||||| ||||| |||||||| ||| || | |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
40153 |
tgtaggccctttataggagttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttc |
40054 |
T |
|
| Q |
107 |
c |
107 |
Q |
| |
|
| |
|
|
| T |
40053 |
c |
40053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
| Q |
125 |
ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa |
224 |
Q |
| |
|
||||||||||||||| || ||| ||||| ||||||||| ||||||| |||| || || || ||||||| |||||||| |||||||||||||| || || |
|
|
| T |
36915336 |
ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa |
36915435 |
T |
|
| Q |
225 |
ggta |
228 |
Q |
| |
|
|||| |
|
|
| T |
36915436 |
ggta |
36915439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 43494 - 43607
Alignment:
| Q |
6 |
atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt |
105 |
Q |
| |
|
|||||| || ||||| || |||||||| |||||||||||||| | ||||| || ||||| || ||||| ||||| |||| ||||||||| || || ||| |
|
|
| T |
43494 |
atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt |
43593 |
T |
|
| Q |
106 |
cctcttgcatttgg |
119 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
43594 |
cctttagcatttgg |
43607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 18131674 - 18131561
Alignment:
| Q |
6 |
atgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtacttt |
105 |
Q |
| |
|
|||||| || ||||| || |||||||| |||||||||||||| | ||||| || ||||| || ||||| ||||| |||| ||||||||| || || ||| |
|
|
| T |
18131674 |
atgtagaccttttatcggtgttgatggttgtcatctaaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatatttt |
18131575 |
T |
|
| Q |
106 |
cctcttgcatttgg |
119 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
18131574 |
cctttagcatttgg |
18131561 |
T |
|
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