View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1531_1D_low_44 (Length: 247)

Name: NF1531_1D_low_44
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1531_1D_low_44
NF1531_1D_low_44
[»] chr5 (19 HSPs)
chr5 (4-124)||(6012339-6012456)
chr5 (4-123)||(13006999-13007115)
chr5 (4-124)||(38597568-38597685)
chr5 (8-124)||(9113926-9114039)
chr5 (16-124)||(34945204-34945309)
chr5 (5-67)||(11977192-11977254)
chr5 (7-67)||(25979931-25979991)
chr5 (8-101)||(26825203-26825292)
chr5 (4-63)||(7035998-7036057)
chr5 (20-124)||(26878280-26878380)
chr5 (35-124)||(31391958-31392044)
chr5 (19-124)||(38007143-38007245)
chr5 (34-121)||(8096701-8096784)
chr5 (10-63)||(7929975-7930028)
chr5 (4-67)||(24230041-24230105)
chr5 (9-63)||(13421718-13421773)
chr5 (8-59)||(41630285-41630336)
chr5 (9-58)||(14664152-14664201)
chr5 (4-49)||(14726741-14726786)
[»] chr2 (24 HSPs)
chr2 (4-124)||(4778534-4778651)
chr2 (5-124)||(7646254-7646370)
chr2 (7-124)||(7448032-7448146)
chr2 (14-124)||(9169459-9169565)
chr2 (4-124)||(12677497-12677614)
chr2 (4-101)||(27097630-27097723)
chr2 (11-124)||(1421459-1421570)
chr2 (6-124)||(4098886-4099001)
chr2 (14-62)||(42698935-42698983)
chr2 (11-66)||(31129004-31129059)
chr2 (6-124)||(36943325-36943440)
chr2 (19-124)||(7678079-7678181)
chr2 (14-124)||(8809073-8809179)
chr2 (4-124)||(43397320-43397437)
chr2 (11-66)||(4904392-4904447)
chr2 (4-63)||(35220112-35220171)
chr2 (8-123)||(11985432-11985544)
chr2 (8-124)||(31788241-31788354)
chr2 (38-124)||(38444982-38445064)
chr2 (25-67)||(5428123-5428165)
chr2 (7-69)||(17994969-17995031)
chr2 (10-92)||(36691653-36691732)
chr2 (34-116)||(37876807-37876886)
chr2 (84-124)||(33760397-33760437)
[»] chr4 (27 HSPs)
chr4 (4-124)||(22610975-22611091)
chr4 (5-124)||(19853713-19853828)
chr4 (6-124)||(13633907-13634021)
chr4 (8-124)||(4142955-4143068)
chr4 (11-124)||(2520575-2520685)
chr4 (4-124)||(26633871-26633988)
chr4 (15-124)||(22558666-22558772)
chr4 (7-124)||(53810822-53810936)
chr4 (15-124)||(53443928-53444033)
chr4 (9-124)||(21686442-21686553)
chr4 (5-124)||(5119130-5119247)
chr4 (11-116)||(10496140-10496242)
chr4 (8-124)||(32766308-32766422)
chr4 (4-67)||(51024716-51024779)
chr4 (9-67)||(56156808-56156866)
chr4 (5-124)||(24099271-24099388)
chr4 (14-63)||(26091172-26091221)
chr4 (6-63)||(33920845-33920902)
chr4 (14-63)||(54021662-54021711)
chr4 (8-124)||(48257650-48257763)
chr4 (4-59)||(22300636-22300691)
chr4 (25-124)||(43510011-43510107)
chr4 (25-124)||(9165243-9165340)
chr4 (25-122)||(29961132-29961226)
chr4 (8-124)||(9178152-9178265)
chr4 (8-64)||(35348101-35348157)
chr4 (76-120)||(36204586-36204630)
[»] scaffold0088 (1 HSPs)
scaffold0088 (4-124)||(50557-50674)
[»] chr6 (15 HSPs)
chr6 (4-117)||(68209-68318)
chr6 (4-124)||(12170267-12170384)
chr6 (8-124)||(33053369-33053482)
chr6 (10-124)||(23128396-23128507)
chr6 (5-119)||(3913780-3913890)
chr6 (25-124)||(30894430-30894525)
chr6 (6-124)||(34018334-34018449)
chr6 (11-124)||(605983-606093)
chr6 (7-67)||(32328838-32328898)
chr6 (15-124)||(7515402-7515509)
chr6 (4-67)||(9719647-9719710)
chr6 (4-67)||(9721765-9721828)
chr6 (71-124)||(30608714-30608767)
chr6 (11-67)||(9723634-9723690)
chr6 (34-124)||(29320063-29320150)
[»] scaffold0127 (1 HSPs)
scaffold0127 (4-124)||(15263-15380)
[»] chr3 (32 HSPs)
chr3 (8-124)||(21431400-21431512)
chr3 (4-124)||(40556482-40556599)
chr3 (5-124)||(47895923-47896039)
chr3 (8-124)||(9998241-9998355)
chr3 (4-124)||(6954897-6955014)
chr3 (8-124)||(10232845-10232958)
chr3 (8-124)||(10108013-10108124)
chr3 (8-124)||(52923317-52923429)
chr3 (4-63)||(43488856-43488915)
chr3 (5-101)||(45568669-45568761)
chr3 (4-124)||(32701269-32701386)
chr3 (8-101)||(35865158-35865247)
chr3 (12-101)||(38545614-38545699)
chr3 (4-124)||(33579639-33579756)
chr3 (4-67)||(36461686-36461749)
chr3 (5-101)||(40487097-40487189)
chr3 (7-124)||(47042253-47042367)
chr3 (7-101)||(48650960-48651050)
chr3 (8-101)||(10229249-10229338)
chr3 (11-124)||(21534011-21534119)
chr3 (5-120)||(20465173-20465283)
chr3 (4-57)||(20988020-20988073)
chr3 (4-116)||(9319834-9319937)
chr3 (19-124)||(9797731-9797830)
chr3 (7-57)||(12150047-12150097)
chr3 (15-63)||(9688493-9688541)
chr3 (6-124)||(54148764-54148876)
chr3 (25-67)||(12050903-12050945)
chr3 (4-58)||(36910919-36910973)
chr3 (26-67)||(37040575-37040616)
chr3 (13-62)||(45425361-45425410)
chr3 (4-63)||(23800170-23800230)
[»] chr7 (23 HSPs)
chr7 (7-124)||(8013666-8013780)
chr7 (4-124)||(13797132-13797249)
chr7 (5-124)||(9450338-9450454)
chr7 (9-124)||(30757020-30757132)
chr7 (15-124)||(12141509-12141615)
chr7 (11-124)||(37837659-37837769)
chr7 (13-67)||(34899859-34899913)
chr7 (8-124)||(19296655-19296768)
chr7 (12-124)||(42978389-42978498)
chr7 (12-124)||(47590095-47590203)
chr7 (11-124)||(19404955-19405065)
chr7 (12-67)||(45350447-45350502)
chr7 (6-124)||(39171793-39171908)
chr7 (15-124)||(48061206-48061312)
chr7 (4-124)||(38798565-38798677)
chr7 (7-67)||(40992958-40993018)
chr7 (4-67)||(39329048-39329111)
chr7 (11-124)||(3224619-3224728)
chr7 (5-63)||(4529853-4529911)
chr7 (26-124)||(48317013-48317108)
chr7 (9-62)||(5348843-5348896)
chr7 (9-69)||(25287434-25287494)
chr7 (65-113)||(38880791-38880839)
[»] scaffold0026 (1 HSPs)
scaffold0026 (4-101)||(72089-72182)
[»] chr8 (23 HSPs)
chr8 (11-124)||(17693813-17693922)
chr8 (5-124)||(31013770-31013886)
chr8 (5-101)||(10377471-10377563)
chr8 (25-124)||(29937909-29938004)
chr8 (10-124)||(25191265-25191376)
chr8 (9-67)||(45446064-45446122)
chr8 (26-124)||(3673241-3673335)
chr8 (16-67)||(7883493-7883544)
chr8 (4-63)||(27110721-27110780)
chr8 (65-124)||(7677479-7677539)
chr8 (12-124)||(20559943-20560052)
chr8 (12-124)||(20571505-20571614)
chr8 (9-101)||(8412572-8412660)
chr8 (4-98)||(1236919-1237010)
chr8 (25-67)||(23230438-23230480)
chr8 (12-57)||(18537629-18537674)
chr8 (14-70)||(41060475-41060531)
chr8 (28-67)||(33214884-33214923)
chr8 (15-62)||(36948695-36948742)
chr8 (14-56)||(1608242-1608284)
chr8 (9-59)||(29617718-29617768)
chr8 (65-117)||(20553451-20553504)
chr8 (5-66)||(40211560-40211621)
[»] chr1 (17 HSPs)
chr1 (4-124)||(7337864-7337981)
chr1 (10-91)||(27456320-27456397)
chr1 (4-101)||(35484603-35484696)
chr1 (4-67)||(51916907-51916970)
chr1 (4-124)||(35462238-35462356)
chr1 (15-101)||(5983621-5983703)
chr1 (4-101)||(34878496-34878589)
chr1 (5-124)||(10776661-10776777)
chr1 (5-124)||(21947820-21947934)
chr1 (25-124)||(29738837-29738933)
chr1 (11-124)||(45415340-45415450)
chr1 (24-104)||(41176976-41177052)
chr1 (5-67)||(31983955-31984017)
chr1 (11-63)||(14872420-14872472)
chr1 (4-67)||(1742055-1742118)
chr1 (25-120)||(11462653-11462745)
chr1 (5-67)||(26535175-26535237)
[»] scaffold0445 (1 HSPs)
scaffold0445 (8-122)||(1119-1230)
[»] scaffold0017 (1 HSPs)
scaffold0017 (7-124)||(32949-33063)
[»] scaffold0634 (1 HSPs)
scaffold0634 (7-57)||(8288-8338)
[»] scaffold0884 (1 HSPs)
scaffold0884 (15-124)||(2173-2279)
[»] scaffold0087 (1 HSPs)
scaffold0087 (4-124)||(25530-25647)
[»] scaffold0219 (1 HSPs)
scaffold0219 (8-63)||(15097-15152)
[»] scaffold0262 (1 HSPs)
scaffold0262 (18-63)||(2076-2121)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 6012456 - 6012339
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    ||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||    ||||||||||||||| ||||||||| ||| |||||     
T  6012456 ccggccccagttttttagtgggagaaactccaacttctctctaaactttctttctccttc----gttcattgaggaggggtggttttaggtcattttttg 6012361  T
Q  103 acatagaatcacccctctacat 124  Q
    ||||||||||||||||||||||    
T  6012360 acatagaatcacccctctacat 6012339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 13006999 - 13007115
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    ||||||||| |||||| | ||||||||| ||| |||||     
T  13006999 ccggccctagttttttagtgggagaaactccaacttctctctaaactttctttctcc----ttcgttcatcgaggagaggtggttttaggtcattttttg 13007094  T
Q  103 acatagaatcacccctctaca 123  Q
    || ||||||||||||||||||    
T  13007095 acctagaatcacccctctaca 13007115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 38597568 - 38597685
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||    ||||||||| |||||||| ||||||||| | | |||||     
T  38597568 ccggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcc----ttcgttcatcgaggaggggtggttttaggttattttttg 38597663  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||||||||||||||    
T  38597664 acctagaatcacccctctacat 38597685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 9114039 - 9113926
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacat 106  Q
    |||||||||| |||| |||||||||  ||||||| |||||||||||||||    || ||||||||| |||||||| || |||||| ||| |||||||| |    
T  9114039 ccctagttttctagtaggagaaactctaacttctctctaaactttctttc----tctttcgttcatcgaggaggggtgattttaggtcattttttaacct 9113944  T
Q  107 agaatcacccctctacat 124  Q
    ||||||||||||||||||    
T  9113943 agaatcacccctctacat 9113926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 34945204 - 34945309
Alignment:
Q  16 ttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatagaatcac 114  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||||||||||    || || || |||||||||||| ||| ||||| || |||||||||    
T  34945204 ttttagtgggagaaactccaaattctctctaaactttctttctccttcgttc----atcgaagaaggatggttttaggtcattttttgacctagaatcac 34945299  T
Q  115 ccctctacat 124  Q
    || |||||||    
T  34945300 ccttctacat 34945309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 11977254 - 11977192
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    ||||||||||||| ||||| ||||||||  ||||||| |||||||||||||||||||||||||    
T  11977254 cggccctagttttctagtgagagaaactctaacttctctctaaactttctttctccttcgttc 11977192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 25979931 - 25979991
Alignment:
Q  7 gccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    ||||||||||| ||||| | |||||| |||||||| |||||||||||||||||||||||||    
T  25979931 gccctagttttctagtgagcgaaactccaacttctctctaaactttctttctccttcgttc 25979991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 26825203 - 26825292
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    |||||||||| |||||||||||||| ||| |||| ||||||||||||||||||    ||| ||||| |||||||| ||||||||| || |||||    
T  26825203 ccctagttttctagtgggagaaactccaatttctctctaaactttctttctcc----ttctttcatcgaggaggggtggttttaggtctttttt 26825292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 7035998 - 7036057
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    |||||||||||||| ||||| ||||||||  ||||||| |||||||||||||||||||||    
T  7035998 ccggccctagttttctagtgagagaaactcaaacttctctctaaactttctttctccttc 7036057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 26878380 - 26878280
Alignment:
Q  20 agtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatagaatcacccctc 119  Q
    |||| ||||||||||||||||| ||||||||||||||||||    ||| ||||| |||||| | ||||||||  |||||||| |  |||||||||| |||    
T  26878380 agtgagagaaacttcaacttctctctaaactttctttctcc----ttcattcatcgaggagaggtggttttatgtcatttttgatctagaatcacctctc 26878285  T
Q  120 tacat 124  Q
    |||||    
T  26878284 tacat 26878280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 31392044 - 31391958
Alignment:
Q  35 aacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatagaatcacccctctacat 124  Q
    ||||||| ||||||||||||||||||     |||||||| |||||||| ||||||||| ||| ||||| || |||||||||||||||||||    
T  31392044 aacttctctctaaactttctttctcc----atcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcacccctctacat 31391958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 38007143 - 38007245
Alignment:
Q  19 tagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatagaatcacccc 117  Q
    ||||| ||||||||  | ||||| ||||||||||||||||||    ||||||||| |||||||| ||||||||| ||| ||||| || | ||||||||||    
T  38007143 tagtgagagaaactcaatcttctctctaaactttctttctcc----ttcgttcatcgaggaggggtggttttaggtcattttttgacctcgaatcacccc 38007238  T
Q  118 tctacat 124  Q
    |||||||    
T  38007239 tctacat 38007245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 8096784 - 8096701
Alignment:
Q  34 caacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatagaatcacccctcta 121  Q
    |||||||| |||||||||| ||||| |||||||     ||||||||||  ||||||||| |||||||| || ||||||||||||||||    
T  8096784 caacttctctctaaactttttttcttcttcgttt----attgaggaggattggttttaggtcatttttgacctagaatcacccctcta 8096701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 7929975 - 7930028
Alignment:
Q  10 ctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    |||||||| ||||| |||||||| ||| |||| |||||||||||||||||||||    
T  7929975 ctagttttctagtgagagaaactccaaattctctctaaactttctttctccttc 7930028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 24230105 - 24230041
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttct-aaactttctttctccttcgttc 67  Q
    |||||||||||||| ||||| |||||||| |||||||| ||| ||||||||||| | ||||||||    
T  24230105 ccggccctagttttctagtgagagaaactccaacttctctctaaaactttctttgttcttcgttc 24230041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 13421718 - 13421773
Alignment:
Q  9 cctagttttt-tagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||||| ||||    
T  13421718 cctagtttttctagtgagagaaacttcaacttctctttaaactttctttcttcttc 13421773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 41630285 - 41630336
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctc 59  Q
    ||||| ||||| |||| ||||||||||||||||| ||||| |||||||||||    
T  41630285 ccctaatttttcagtgagagaaacttcaacttctctctaagctttctttctc 41630336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 14664152 - 14664201
Alignment:
Q  9 cctagttttttagtgggagaaacttcaacttctttctaaactttctttct 58  Q
    ||||||||||||||| ||||||||||| ||||| |||||| | |||||||    
T  14664152 cctagttttttagtgagagaaacttcatcttctctctaaattatctttct 14664201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 14726786 - 14726741
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaac 49  Q
    |||||||||||||| ||||| ||||||||| ||||||| |||||||    
T  14726786 ccggccctagttttctagtgagagaaactttaacttctctctaaac 14726741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 4778534 - 4778651
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||||| |||||||| ||||||||| ||| |||||     
T  4778534 ccggccctagttttttagtgggagaaactccaacttctttctaaactttctttctcc----ttcgttcatcgaggaggggtggttttaggtcattttttg 4778629  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||||||||||||||    
T  4778630 acctagaatcacccctctacat 4778651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 7646254 - 7646370
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaa 103  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||    ||||||||| |||||||| ||||||||| ||| ||||| |    
T  7646254 cggccctagttttctagtgggagaaactccaacttctctctaaactttctttctcc----ttcgttcatcgaggaggggtggttttaggtcattttttga 7646349  T
Q  104 catagaatcacccctctacat 124  Q
    | |||||||||||||||||||    
T  7646350 cctagaatcacccctctacat 7646370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 7448032 - 7448146
Alignment:
Q  7 gccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaaca 105  Q
    ||||||||||| |||||||||||||| |||||||| ||||||||||||||    ||| ||||||||| |||||||| ||||||||| ||| |||||  |     
T  7448032 gccctagttttctagtgggagaaactccaacttctctctaaactttcttt----ttccttcgttcatcgaggaggggtggttttaggtcattttttgtcc 7448127  T
Q  106 tagaatcacccctctacat 124  Q
    |||||||||||||||||||    
T  7448128 tagaatcacccctctacat 7448146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 9169565 - 9169459
Alignment:
Q  14 ttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatagaatca 113  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||| ||||||     || |||||||| ||||||||| |||||||| || ||||||||    
T  9169565 ttttctagtgggagaaactccaacttctctctaaactttctttctcattcgttt----atcgaggaggggtggttttaggtcatttttgacctagaatca 9169470  T
Q  114 cccctctacat 124  Q
    |||||||||||    
T  9169469 cccctctacat 9169459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 12677614 - 12677497
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||    || |||||| |||||||| | |||| || ||| |||||     
T  12677614 ccggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcc----tttgttcatcgaggaggggtagtttaaggtcattttttg 12677519  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||||||||||||||    
T  12677518 acctagaatcacccctctacat 12677497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 27097723 - 27097630
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    |||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||    |||||| |||||||| || |||||| ||||||||    
T  27097723 ccggccctagttttctagtggaagaaactccaacttctctctaaactttctttctccttc----gttcatcgaggaggggtgattttaggtcattttt 27097630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 1421459 - 1421570
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca--tttttaacatag 108  Q
    ||||||| ||||| |||||||| ||||||||  |||||||||||||||||    ||||||||| |||||||| ||||||||| |||  ||||| | ||||    
T  1421459 tagttttctagtgagagaaactccaacttctcgctaaactttctttctcc----ttcgttcatcgaggaggggtggttttaggtcatttttttgatatag 1421554  T
Q  109 aatcacccctctacat 124  Q
    ||||||||||||||||    
T  1421555 aatcacccctctacat 1421570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 4098886 - 4099001
Alignment:
Q  6 ggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaac 104  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||    || ||| ||||| ||||| || ||| ||||| ||| ||||| ||    
T  4098886 ggccctagttttttagtgggagaaactccaacttctctctaaactttctttc----tctttccttcatcgaggaagggtggctttaggtcattttttgac 4098981  T
Q  105 atagaatcacccctctacat 124  Q
     ||||||||||| |||||||    
T  4098982 ctagaatcacccatctacat 4099001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 42698983 - 42698935
Alignment:
Q  14 ttttttagtgggagaaacttcaacttctttctaaactttctttctcctt 62  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42698983 ttttttagtgagagaaacttcaacttctttctaaactttctttctcctt 42698935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 31129059 - 31129004
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgtt 66  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  31129059 tagttttttagtgagaaaaacttcaacttctctctaaactttctttctccttcgtt 31129004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 36943440 - 36943325
Alignment:
Q  6 ggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaac 104  Q
    |||||||||||| ||||| |||||||| ||| || | ||||||||||||||||||||    |||| || |||||||| ||||||||| ||| ||||| ||    
T  36943440 ggccctagttttctagtgagagaaactccaatttatctctaaactttctttctcctt----cgttgatcgaggaggggtggttttaggtcattttttgac 36943345  T
Q  105 atagaatcacccctctacat 124  Q
     |||||||||| ||||||||    
T  36943344 ctagaatcaccactctacat 36943325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 7678181 - 7678079
Alignment:
Q  19 tagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta-acatagaatcacccc 117  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||||     || || ||||| ||||||||| ||||||||  || ||||||||||||    
T  7678181 tagtgagagaaactccaacttctctctaaactttctttctccttcgttg----atcgatgaggggtggttttaggtcattttttgacctagaatcacccc 7678086  T
Q  118 tctacat 124  Q
    |||||||    
T  7678085 tctacat 7678079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 8809073 - 8809179
Alignment:
Q  14 ttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatagaatca 113  Q
    ||||||||| |||||||||  ||||||| ||||||||||||||||||||| | ||    | |||||  | |||||||||||||||||| || || |||||    
T  8809073 ttttttagtaggagaaactctaacttctctctaaactttctttctccttcatacg----tcgaggacaggtggttttagatcatttttgacctaaaatca 8809168  T
Q  114 cccctctacat 124  Q
    |||||||||||    
T  8809169 cccctctacat 8809179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 43397437 - 43397320
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||||||||||||| ||||| |||||||| |||||||| | ||||||||||||    ||  ||||||||| ||| |||| ||||||||| ||| |||||     
T  43397437 ccggccctagttttctagtgagagaaactccaacttctctttaaactttcttt----tttcttcgttcatcgagaaggggtggttttaggtcattttttg 43397342  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||||| ||||||||    
T  43397341 acctagaatcacctctctacat 43397320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 4904447 - 4904392
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgtt 66  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||    
T  4904447 tagttttttagtaagagaaacttcaacttctctctaaactttctttctcattcgtt 4904392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 35220112 - 35220171
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    |||||||||||||| ||||| |||||||| |||| ||| |||||||||||||||||||||    
T  35220112 ccggccctagttttctagtgagagaaactccaacctctctctaaactttctttctccttc 35220171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 11985544 - 11985432
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacat 106  Q
    |||||||||| || || |||||||| |||||||| ||||||||||||||||| ||| ||| |||   |||||| | ||||||||  ||| |||||||| |    
T  11985544 ccctagttttctaatgagagaaactccaacttctctctaaactttctttctctttcattc-ttc---gaggagtggtggttttaagtcattttttaacct 11985449  T
Q  107 agaatcacccctctaca 123  Q
    |||||||||||||||||    
T  11985448 agaatcacccctctaca 11985432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 31788241 - 31788354
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta-acat 106  Q
    ||||| |||| ||||| |||||||| |||||||| |||||||||||||||| ||||||||    || |||||| |  |||||||| | ||||||  || |    
T  31788241 ccctaattttctagtgagagaaactccaacttctctctaaactttctttcttcttcgttc----atcgaggagaggcggttttaggtaattttttgacct 31788336  T
Q  107 agaatcacccctctacat 124  Q
    ||||||||||||||||||    
T  31788337 agaatcacccctctacat 31788354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 38444982 - 38445064
Alignment:
Q  38 ttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatagaatcacccctctacat 124  Q
    |||| |||||||||||||||||||||||||    || || ||| | ||||||||| |||||||| |  |||||||||||||||||||    
T  38444982 ttctctctaaactttctttctccttcgttc----atcgatgagaggtggttttaggtcatttttgatctagaatcacccctctacat 38445064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 5428165 - 5428123
Alignment:
Q  25 gagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||||| |||||||| |||||| ||||||||||||||||||    
T  5428165 gagaaactccaacttctctctaaattttctttctccttcgttc 5428123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 17995031 - 17994969
Alignment:
Q  7 gccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgt 69  Q
    |||||||||||| | ||  |||||||||| ||||| ||||||||||||||||| |||| ||||    
T  17995031 gccctagtttttcaatgacagaaacttcatcttctctctaaactttctttctcattcggtcgt 17994969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 36691653 - 36691732
Alignment:
Q  10 ctagttttttagtgggagaaacttcaactt-ctttctaaactttctttctccttcgttcgttcattgaggagggatggttttag 92  Q
    |||||||| ||||| |||||||| |||||| |||||||||| ||||||||||||| ||     ||||||||||| |||||||||    
T  36691653 ctagttttctagtgagagaaactccaactttctttctaaaccttctttctccttcctta----attgaggaggggtggttttag 36691732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 37876886 - 37876807
Alignment:
Q  34 caacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatc-atttttaacatagaatcaccc 116  Q
    |||||||| |||||||||||||||| |    ||||||||| |||||||| ||||||||| || |||||| || |||||||||||    
T  37876886 caacttctctctaaactttctttcttc----ttcgttcatcgaggaggggtggttttaggtcaatttttgacctagaatcaccc 37876807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 33760437 - 33760397
Alignment:
Q  84 tggttttagatcatttttaacatagaatcacccctctacat 124  Q
    |||||||| ||||||||| |||||||||||||| |||||||    
T  33760437 tggttttatatcatttttgacatagaatcacccatctacat 33760397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 22610975 - 22611091
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaa 103  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||     |||||||| ||||||||| |||||||| |    
T  22610975 ccggccctagttttttagtgggagaaactccaacttctctctaaactttctttctccttcgttcgtc----gaggaggggtggttttaggtcatttttga 22611070  T
Q  104 catagaatcacccctctacat 124  Q
    | ||||||||||| |||||||    
T  22611071 cctagaatcacccatctacat 22611091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 19853828 - 19853713
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaac 104  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||    ||| ||||| |||||||| ||||||||| |||||||| ||    
T  19853828 cggccctagttttctagtgggagaaactccaacttctctctaaactttctttcccc----ttcattcatcgaggaggggtggttttaggtcatttttgac 19853733  T
Q  105 atagaatcacccctctacat 124  Q
     |||||||||||||||||||    
T  19853732 ctagaatcacccctctacat 19853713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 13633907 - 13634021
Alignment:
Q  6 ggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaaca 105  Q
    |||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||    |||| |||| |||||| | ||||||||| |||||||| |||    
T  13633907 ggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcc----ttcgctcatcgaggagtggtggttttaggtcatttttgaca 13634002  T
Q  106 tagaatcacccctctacat 124  Q
    |||||||||||||||||||    
T  13634003 tagaatcacccctctacat 13634021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 4143068 - 4142955
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacat 106  Q
    ||||||||||||||||||||||||| |||||||| | ||||||||||||||||    || |||||| |||||||| ||||||||| ||| ||||| || |    
T  4143068 ccctagttttttagtgggagaaactccaacttctctataaactttctttctcc----tttgttcatcgaggaggggtggttttaggtcattttttgacct 4142973  T
Q  107 agaatcacccctctacat 124  Q
    ||||||||||||||||||    
T  4142972 agaatcacccctctacat 4142955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 2520575 - 2520685
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacataga 109  Q
    ||||||| ||||| |||||||| |||||||| ||||||||||||||||||    ||||||||| |||||||| ||||||||| ||| ||||| || ||||    
T  2520575 tagttttctagtgagagaaactccaacttctctctaaactttctttctcc----ttcgttcatcgaggaggggtggttttaggtcattttttgacctaga 2520670  T
Q  110 atcacccctctacat 124  Q
    |||||||||||||||    
T  2520671 atcacccctctacat 2520685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 26633988 - 26633871
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||| ||||||||||||||| |||||||| |||||||| |||||||||||||||| |    |||||||||||||||||| |||| |||| ||| |||||     
T  26633988 ccggtcctagttttttagtgagagaaactccaacttctctctaaactttctttcttc----ttcgttcattgaggaggggtggtcttaggtcattttttg 26633893  T
Q  103 acatagaatcacccctctacat 124  Q
    || ||||||||||||| |||||    
T  26633892 acctagaatcacccctatacat 26633871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 22558772 - 22558666
Alignment:
Q  15 tttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatagaatca 113  Q
    ||||||| | |||||||| ||| |||| |||||||||||||||||||||    ||||||||||||||| ||||||||| ||| ||||| |||||||||||    
T  22558772 tttttagagagagaaactccaatttctctctaaactttctttctccttc----gttcattgaggaggggtggttttaggtcattttttgacatagaatca 22558677  T
Q  114 cccctctacat 124  Q
    || ||||||||    
T  22558676 cctctctacat 22558666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 53810822 - 53810936
Alignment:
Q  7 gccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaaca 105  Q
    ||||||||||| |||||||||||||| || ||||| ||||||||||||| ||||    ||||||||| |||||||| ||||||||| ||| ||||| ||     
T  53810822 gccctagttttctagtgggagaaactccagcttctctctaaactttcttcctcc----ttcgttcatcgaggaggggtggttttaggtcattttttgacc 53810917  T
Q  106 tagaatcacccctctacat 124  Q
    || ||||||||||||||||    
T  53810918 tataatcacccctctacat 53810936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 53443928 - 53444033
Alignment:
Q  15 tttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatagaatcac 114  Q
    ||||||||| || |||||||||||||| |||||||||| |||||| ||||    |||||||||||| | ||||||||| |||||||| || ||||| |||    
T  53443928 tttttagtgagataaacttcaacttctctctaaactttttttctctttcg----ttcattgaggagcgttggttttaggtcatttttgacctagaaacac 53444023  T
Q  115 ccctctacat 124  Q
    ||||||||||    
T  53444024 ccctctacat 53444033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 21686553 - 21686442
Alignment:
Q  9 cctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatag 108  Q
    ||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||    || |||||| |||||||| |||||| || || ||||| || ||     
T  21686553 cctagttttctagtgagagaaactttaacttctctctaaactttctttctcc----tttgttcatcgaggaggggtggtttgaggtcttttttgacctaa 21686458  T
Q  109 aatcacccctctacat 124  Q
    ||||||||||||||||    
T  21686457 aatcacccctctacat 21686442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 5119130 - 5119247
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta-- 102  Q
    ||||||||||||| ||||| || ||| ||||||||||||||||||||| |||||||||| |||    ||  ||||||| ||||||||  ||||||||       
T  5119130 cggccctagttttctagtgagataaatttcaacttctttctaaactttatttctccttcattc----atcaaggaggggtggttttatgtcatttttttt 5119225  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||||||||||||||    
T  5119226 acctagaatcacccctctacat 5119247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 10496140 - 10496242
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatc-atttttaacataga 109  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||| ||||    ||||||||| |||||||  ||||||||| || |||||| || ||||    
T  10496140 tagttttctagtgagagaaactccaacttctttctaaactttcttactcc----ttcgttcatcgaggaggtgtggttttaggtcaatttttgacctaga 10496235  T
Q  110 atcaccc 116  Q
    |||||||    
T  10496236 atcaccc 10496242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 32766308 - 32766422
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttct-aaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaaca 105  Q
    |||||||||| |||||| ||||||| |||||||||||| |||  || |||||||    |||||||||||||  ||| ||||||||| ||| ||||| ||     
T  32766308 ccctagttttctagtggaagaaactccaacttctttctaaaaaattttttctcc----ttcgttcattgagagggggtggttttaggtcattttttgacc 32766403  T
Q  106 tagaatcacccctctacat 124  Q
    |||||||||||||||||||    
T  32766404 tagaatcacccctctacat 32766422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 51024779 - 51024716
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    ||||||||| ||||  |||| |||||||| |||||||| |||| ||||||||||||||||||||    
T  51024779 ccggccctaattttccagtgagagaaactccaacttctctctatactttctttctccttcgttc 51024716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 56156866 - 56156808
Alignment:
Q  9 cctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||||||||| || |||||||| |||||||| ||||||||||||||||  |||||||    
T  56156866 cctagttttttattgagagaaactccaacttctctctaaactttctttcttattcgttc 56156808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 24099388 - 24099271
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca--ttttta 102  Q
    ||||||||||||| |||||  |||||||| || |||| |||||||||||||||| |    | ||||||| |||||| | ||||||||| |||  |||||     
T  24099388 cggccctagttttctagtgaaagaaactttaaattctctctaaactttctttcttc----tacgttcatcgaggagaggtggttttaggtcatttttttg 24099293  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||| ||||||||||    
T  24099292 acctagaatcatccctctacat 24099271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 26091221 - 26091172
Alignment:
Q  14 ttttttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    |||||||||| |||||||| |||||||| ||||||| |||||||||||||    
T  26091221 ttttttagtgagagaaactccaacttctctctaaaccttctttctccttc 26091172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 33920845 - 33920902
Alignment:
Q  6 ggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    |||| ||||||||||||| ||||||||||||||| |  ||||||||||||||| ||||    
T  33920845 ggccttagttttttagtgagagaaacttcaacttttccctaaactttctttcttcttc 33920902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 54021662 - 54021711
Alignment:
Q  14 ttttttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    |||||||||| |||||||||||| |||| |||||||||||||||| ||||    
T  54021662 ttttttagtgagagaaacttcaatttctctctaaactttctttcttcttc 54021711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 48257763 - 48257650
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta-acat 106  Q
    |||||||||| ||||| || ||||| |||||||| | ||||||||||||||| ||||| |    || |||||||| ||||||||  ||||||||  || |    
T  48257763 ccctagttttctagtgagaaaaactccaacttctctttaaactttctttctcattcgtac----atcgaggaggggtggttttatgtcattttttgacct 48257668  T
Q  107 agaatcacccctctacat 124  Q
    |||||||||| |||||||    
T  48257667 agaatcacccatctacat 48257650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 22300636 - 22300691
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctc 59  Q
    |||||||||||||||||| | |||||||| |||||||| |||||| ||| ||||||    
T  22300636 ccggccctagttttttagagagagaaactccaacttctctctaaattttatttctc 22300691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 43510011 - 43510107
Alignment:
Q  25 gagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatagaatcacccctctaca 123  Q
    ||||||||||||||||| | ||||||||| ||||||    ||||||||| || || || ||||||||| ||| ||||| || ||||||||| ||||||||    
T  43510011 gagaaacttcaacttctctttaaactttcattctcc----ttcgttcatcgaagaagggtggttttaggtcattttttgacctagaatcactcctctaca 43510106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 9165340 - 9165243
Alignment:
Q  25 gagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatc--atttttaacatagaatcacccctctac 122  Q
    |||||||| |||||||| ||||||||||||||    |||  || ||||| |||||| | ||||||||| ||  |||||| || |||||||||||||||||    
T  9165340 gagaaactccaacttctctctaaactttcttt----ttccatcattcatcgaggagaggtggttttaggtcatattttttacctagaatcacccctctac 9165245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 29961226 - 29961132
Alignment:
Q  25 gagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatagaatcacccctctac 122  Q
    |||||||| |||||||| ||||||||||||||    ||| || |||||| || |||||||| |||||| | | ||||| |||||||||||||| |||||    
T  29961226 gagaaactccaacttctctctaaactttcttt----ttcctttgttcatcgaagagggatgattttaggttattttttgacatagaatcacccatctac 29961132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 9178152 - 9178265
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta-acat 106  Q
    |||||||||| | ||| |||||||||||  |||| |||||| |||||||||||||| |||    ||  ||||||| |||| |||| ||||||||  || |    
T  9178152 ccctagttttctggtgagagaaacttcagtttctctctaaaatttctttctccttcattc----atcaaggaggggtggtcttaggtcattttttgacct 9178247  T
Q  107 agaatcacccctctacat 124  Q
    |||||||||| |||||||    
T  9178248 agaatcacccttctacat 9178265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 35348101 - 35348157
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcg 64  Q
    |||||||||| |||||  ||||||| |||||||| | |||||||| |||||||||||    
T  35348101 ccctagttttctagtgaaagaaactccaacttctctttaaactttttttctccttcg 35348157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 36204630 - 36204586
Alignment:
Q  76 aggagggatggttttagatcatttttaacatagaatcacccctct 120  Q
    |||| |||||||||||| |||||||| || |||||||||||||||    
T  36204630 aggatggatggttttaggtcattttttacctagaatcacccctct 36204586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 50557 - 50674
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    |||||||||||||||||| || |||||| ||| |||||     
T  50557 ccggccctagttttctagtgggagaaactccaacttctttctaaactttctttctcc----ttcgttcattgaggaggggtgattttaggtcactttttg 50652  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||| ||||||||||    
T  50653 acctagaatcatccctctacat 50674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 68318 - 68209
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaa 103  Q
    ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||    |||||| |||||||||||||||||| | |||||| |    
T  68318 ccggccctagttttttagtaggagaaactccaacttctctctaaactttctttctccttc----gttcatcgaggagggatggttttaggtaatttttga 68223  T
Q  104 catagaatcacccc 117  Q
    | ||||||||||||    
T  68222 cctagaatcacccc 68209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 12170267 - 12170384
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||||||||||||| ||||| |||||||| |||||||| |||| |||||||||||||    ||||||||| |||||||| ||||||||| ||| |||||     
T  12170267 ccggccctagttttctagtgagagaaactccaacttctctctagactttctttctcc----ttcgttcatcgaggaggggtggttttaggtcattttttg 12170362  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||||||||||||||    
T  12170363 acctagaatcacccctctacat 12170384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 33053482 - 33053369
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacat 106  Q
    |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||    |||||| |||||||| ||||||||| ||| ||||| || |    
T  33053482 ccctagttttctagtgggagaaactccaacttctctctaaactttctttctccttc----gttcatcgaggaggggtggttttaggtcattttttgacct 33053387  T
Q  107 agaatcacccctctacat 124  Q
    ||||||| ||||||||||    
T  33053386 agaatcatccctctacat 33053369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 23128396 - 23128507
Alignment:
Q  10 ctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatag 108  Q
    ||||| || ||||||||||||||  ||||||| ||||||||||||||||||    |||||||||||||||||||| ||||||| ||| ||||| || |||    
T  23128396 ctagtattctagtgggagaaactctaacttctctctaaactttctttctcc----ttcgttcattgaggagggatagttttaggtcattttttgacctag 23128491  T
Q  109 aatcacccctctacat 124  Q
    ||||||||||||||||    
T  23128492 aatcacccctctacat 23128507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 3913890 - 3913780
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaa 103  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||    || |||||| |||||||| ||||||||| ||| ||||| |    
T  3913890 cggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcc----tttgttcatcgaggaggg-tggttttaggtcattttttga 3913796  T
Q  104 catagaatcacccctc 119  Q
    | ||||||||||||||    
T  3913795 cctagaatcacccctc 3913780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 30894430 - 30894525
Alignment:
Q  25 gagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatagaatcacccctctaca 123  Q
    ||||||||||||||||| |||||||||| |||||||||||||     || |||||||| ||||||||||||| ||||| || ||||||||||||||||||    
T  30894430 gagaaacttcaacttctctctaaacttt-tttctccttcgtta----atcgaggaggggtggttttagatcattttttgacctagaatcacccctctaca 30894524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 34018334 - 34018449
Alignment:
Q  6 ggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaac 104  Q
    ||||||||||||  |||| ||||| |||||| || | ||||||||||||||||||    ||||||||| ||||| ||| |||||||| ||| ||||| ||    
T  34018334 ggccctagttttccagtgagagaagcttcaatttttgtctaaactttctttctcc----ttcgttcatcgaggatggaaggttttaggtcattttttgac 34018429  T
Q  105 atagaatcacccctctacat 124  Q
     |||||||||||||||||||    
T  34018430 ctagaatcacccctctacat 34018449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 605983 - 606093
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacataga 109  Q
    ||||||| |||||||||||||| |||||| | ||||||||||||||||||    ||||||||| |||||||| || |||||  ||| ||||| || |||     
T  605983 tagttttctagtgggagaaactccaacttttctctaaactttctttctcc----ttcgttcatcgaggaggggtgattttatgtcattttttgacctagg 606078  T
Q  110 atcacccctctacat 124  Q
    |||||||||||||||    
T  606079 atcacccctctacat 606093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 32328898 - 32328838
Alignment:
Q  7 gccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    ||||||||||| ||||| ||||||||  ||||||| |||| ||||||||||||||||||||    
T  32328898 gccctagttttctagtgagagaaactctaacttctctctatactttctttctccttcgttc 32328838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 7515509 - 7515402
Alignment:
Q  15 tttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca--tttttaacatagaatc 112  Q
    ||||||| | ||||| || |||||||| ||||||||| ||||||| |||||||    || |||||||| ||||||||||| |  ||||| || |||||||    
T  7515509 tttttagagagagaagctccaacttctctctaaacttgctttctctttcgttc----atcgaggaggggtggttttagattatttttttgacctagaatc 7515414  T
Q  113 acccctctacat 124  Q
    ||||||||||||    
T  7515413 acccctctacat 7515402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 9719710 - 9719647
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||| ||||||| | ||| |||||||| |||||||| ||||||||||||||||| |||||||    
T  9719710 ccggccatagttttcttgtgagagaaactccaacttctctctaaactttctttctcgttcgttc 9719647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 9721828 - 9721765
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||| || |||| ||||| |||||||| |||||||| ||||||||||||||||| |||||||    
T  9721828 ccggccataattttctagtgagagaaactccaacttctctctaaactttctttctcgttcgttc 9721765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 30608767 - 30608714
Alignment:
Q  71 cattgaggagggatggttttagatcatttttaacatagaatcacccctctacat 124  Q
    |||| |||| |||||||||||| |||||||| || |||||||||||||||||||    
T  30608767 cattaaggatggatggttttaggtcatttttgacctagaatcacccctctacat 30608714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 9723690 - 9723634
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    ||||||| |||||  ||||||| |||||||| ||||||||||||||||| |||||||    
T  9723690 tagttttctagtgaaagaaactccaacttctctctaaactttctttctcgttcgttc 9723634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 29320150 - 29320063
Alignment:
Q  34 caacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcat-ttttaacatagaatcacccctctacat 124  Q
    |||||||| | |||||||||||||||||||    |||||| ||||| || ||||||||| |||| |||| |  |||||||||||||||||||    
T  29320150 caacttctctttaaactttctttctccttc----gttcatcgaggatgggtggttttaggtcatattttgatctagaatcacccctctacat 29320063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 15263 - 15380
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||   |||||||| ||||||||| ||| |||||     
T  15263 ccggccctagttttctagtgagagaaacttcaacttctctctaaactttctttctccttcgttc-ttc---gaggaggggtggttttaggtcattttttg 15358  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||||||||||||||    
T  15359 acctagaatcacccctctacat 15380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 21431400 - 21431512
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacata 107  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||||||||    ||||||||| |||||||| ||||||||| |||||||| || ||    
T  21431400 ccctagttttctagtgggagaaactccaacttctctctaaactttctttctcc----ttcgttcatcgaggaggggtggttttaggtcatttttgaccta 21431495  T
Q  108 gaatcacccctctacat 124  Q
     ||||||||||||||||    
T  21431496 aaatcacccctctacat 21431512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 40556482 - 40556599
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||    || ||||||||| |||||||| ||||||||| ||| |||||     
T  40556482 ccggccctagttttctagtgggagaaactccaacttctttctaaactttctttc----tcattcgttcatcgaggaggggtggttttaggtcattttttg 40556577  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||||||||| ||||    
T  40556578 acctagaatcacccctccacat 40556599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 47895923 - 47896039
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaa 103  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||    ||||||||| |||||||| ||||| ||||||| ||||| |    
T  47895923 cggccctagttttctagtgagagaaactccaacttctctctaaactttctttctcc----ttcgttcatcgaggaggggtggttatagatcattttttga 47896018  T
Q  104 catagaatcacccctctacat 124  Q
    | |||||||||||||||||||    
T  47896019 cctagaatcacccctctacat 47896039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 9998241 - 9998355
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca--tttttaaca 105  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||||||||    ||||||||| |||||||| ||||||||| |||  ||||| ||     
T  9998241 ccctagttttctagtgggagaaactccaacttctctctaaactttctttctcc----ttcgttcatcgaggaggggtggttttaggtcatttttttgacc 9998336  T
Q  106 tagaatcacccctctacat 124  Q
    |||||||||||||||||||    
T  9998337 tagaatcacccctctacat 9998355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 6955014 - 6954897
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||    ||||| ||||||||| || |||||| ||| |||||     
T  6955014 ccggccctagttttctagtggaagaaactccaacttctctctaaactttctttctccttc----gttcactgaggaggggtgattttaggtcattttttg 6954919  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||||||||||||||    
T  6954918 acctagaatcacccctctacat 6954897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 10232845 - 10232958
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta-acat 106  Q
    |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||    ||  ||||||| ||||||||| ||||||||  || |    
T  10232845 ccctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttc----atcaaggaggggtggttttaggtcattttttgacct 10232940  T
Q  107 agaatcacccctctacat 124  Q
    ||||||||||||||||||    
T  10232941 agaatcacccctctacat 10232958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 10108013 - 10108124
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacata 107  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||||||||    || |||||| |||||||| ||||||||| ||| |||| || ||    
T  10108013 ccctagttttctagtgggagaaactccaacttctctctaaactttctttctcc----tttgttcatcgaggaggggtggttttaggtca-ttttgaccta 10108107  T
Q  108 gaatcacccctctacat 124  Q
    |||||||||||||||||    
T  10108108 gaatcacccctctacat 10108124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 52923429 - 52923317
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacata 107  Q
    ||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||    ||||||||||||| | | ||||||  |||||||| || ||    
T  52923429 ccctatttttttagtggaagaaactccaacttctctctaaactttctttctccttc----gttcattgaggagaggtagttttaagtcatttttgaccta 52923334  T
Q  108 gaatcacccctctacat 124  Q
    |||||||||||||||||    
T  52923333 gaatcacccctctacat 52923317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 43488915 - 43488856
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  43488915 ccggccctagttttttagtgagagaaacttcaacttctctctaaactttctttctccttc 43488856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 45568761 - 45568669
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    ||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||    |||||| |||||||| ||||||||| ||||||||    
T  45568761 cggccctagttttctagtgagagaaactccaacttctctctaaactttctttctccttc----gttcatcgaggaggggtggttttaggtcattttt 45568669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 32701269 - 32701386
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||||||||||||| |||||| ||||||| |||||||| | ||||||||||||||||    ||||||||| |||| ||| ||||||||| ||| |||||     
T  32701269 ccggccctagttttctagtggaagaaactccaacttctctttaaactttctttctcc----ttcgttcatcgaggtggggtggttttaggtcattttttg 32701364  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||| ||||||||||    
T  32701365 acctagaatcatccctctacat 32701386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 35865247 - 35865158
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||    |||| | |||||||| ||||||||| ||||||||    
T  35865247 ccctagttttctagtgagagaaacttcaacttctctctaaactttctttctccttc----gttcctcgaggaggggtggttttaggtcattttt 35865158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 38545614 - 38545699
Alignment:
Q  12 agttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||||||    |||||||||||||||| | ||||||||| ||||||||    
T  38545614 agttttctagtgagagaaacttcaacttctctctaaactttctttctcc----ttcgttcattgaggagtggtggttttaggtcattttt 38545699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 33579639 - 33579756
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta- 102  Q
    |||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||    || || || || ||||||||  ||||||||      
T  33579639 ccggcccttgttttctagtgagagaaacttcaacttctctctaaactttctttatccttcgttc----atcgaagaagggtggttttaagtcattttttg 33579734  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||||||||||||||    
T  33579735 acctagaatcacccctctacat 33579756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 36461749 - 36461686
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||||||||||| ||||| |||||||||||  |||| |||||||||||||||||||||||||    
T  36461749 ccggccctagttttctagtgtgagaaacttcatattctctctaaactttctttctccttcgttc 36461686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 40487097 - 40487189
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    |||||||| |||| ||||| |||||||| |||||||| ||||||||||||||||||    ||||||||| |||||||| || |||||| ||||||||    
T  40487097 cggccctaattttctagtgagagaaactccaacttctctctaaactttctttctcc----ttcgttcatcgaggaggggtgattttaggtcattttt 40487189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 47042367 - 47042253
Alignment:
Q  7 gccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt-aaca 105  Q
    |||||| |||| |||||  ||||||| |||||||| |||||||||| ||| ||||||||||    || |||||||| ||||||||| |||||||| |||     
T  47042367 gccctaattttctagtgaaagaaactccaacttctctctaaactttatttatccttcgttc----atcgaggaggggtggttttaggtcattttttaacc 47042272  T
Q  106 tagaatcacccctctacat 124  Q
    || ||||||||||||||||    
T  47042271 tataatcacccctctacat 47042253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 48651050 - 48650960
Alignment:
Q  7 gccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    ||||||||||| |||||  ||||||| |||||||| ||||||||||||||||||     |||||||| |||||||| ||||||||| ||||||||    
T  48651050 gccctagttttctagtgaaagaaactccaacttctctctaaactttctttctcc----atcgttcatcgaggaggggtggttttaggtcattttt 48650960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 10229249 - 10229338
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    |||||||||| |||||||||||||| ||| |||| ||||||||||||||||||    ||| ||||| |||||||| ||||||||| || |||||    
T  10229249 ccctagttttctagtgggagaaactccaatttctctctaaactttctttctcc----ttctttcatcgaggaggggtggttttaggtctttttt 10229338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 21534119 - 21534011
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatagaa 110  Q
    ||||||||||||| ||||||||  || |||| ||||||||||||||||||||||||     || ||||| || ||||||||| || ||||| || |||||    
T  21534119 tagttttttagtgagagaaactctaatttctctctaaactttctttctccttcgtta----atcgaggatgggtggttttaggtc-tttttgacctagaa 21534025  T
Q  111 tcacccctctacat 124  Q
    ||||||||||||||    
T  21534024 tcacccctctacat 21534011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 20465283 - 20465173
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaac 104  Q
    ||||||||||||| | ||| |||||||||||||||| || |||| |||||||||||||| |||    ||  || |||| ||||||||  |||||||| ||    
T  20465283 cggccctagttttcttgtgagagaaacttcaacttccttttaaa-tttctttctccttcattc----atcaagtaggggtggttttatgtcatttttgac 20465189  T
Q  105 atagaatcacccctct 120  Q
    ||||||||||||||||    
T  20465188 atagaatcacccctct 20465173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 20988073 - 20988020
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttc 57  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||| |||||    
T  20988073 ccggccctagttttttagtgagagaaactccaacttctctctaaacttcctttc 20988020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 9319834 - 9319937
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaa 103  Q
    |||||||||||||||||||||||||||||  ||||||| |||||| ||||         | ||||||||| |||||||  ||||||||||| |||||| |    
T  9319834 ccggccctagttttttagtgggagaaactctaacttctctctaaattttc---------ccttcgttcatcgaggaggagtggttttagattatttttga 9319924  T
Q  104 catagaatcaccc 116  Q
    |||| ||||||||    
T  9319925 catataatcaccc 9319937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 9797830 - 9797731
Alignment:
Q  19 tagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta-acatagaatcacccc 117  Q
    ||||| |||||||| |||||||| |||||||||| ||||||||||||||    |||||| |||  ||||||||| ||||||||  || ||||||||||||    
T  9797830 tagtgagagaaactccaacttctctctaaactttatttctccttcgttc----attgag-agg--tggttttaggtcattttttgacctagaatcacccc 9797738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 12150097 - 12150047
Alignment:
Q  7 gccctagttttttagtgggagaaacttcaacttctttctaaactttctttc 57  Q
    ||||||||||||||||| |||| |||||||||||| | |||||||||||||    
T  12150097 gccctagttttttagtgagagacacttcaacttctctataaactttctttc 12150047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 9688541 - 9688493
Alignment:
Q  15 tttttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||| ||||    
T  9688541 tttttagtgagagaaacttcaacttctctctaaattttctttcttcttc 9688493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 54148764 - 54148876
Alignment:
Q  6 ggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta-ac 104  Q
    |||||||||||| ||||| ||||   ||||| |||| |||||||||||||||||||||||      || |||||||| ||||||||| ||||||||  ||    
T  54148764 ggccctagttttctagtgagaga---ttcaatttctctctaaactttctttctccttcgtca----atcgaggaggggtggttttaggtcattttttgac 54148856  T
Q  105 atagaatcacccctctacat 124  Q
     || ||||||||||||||||    
T  54148857 ctacaatcacccctctacat 54148876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 12050945 - 12050903
Alignment:
Q  25 gagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||||| |||||||| |||||| ||||||||||||||||||    
T  12050945 gagaaactccaacttctctctaaattttctttctccttcgttc 12050903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 36910973 - 36910919
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttct 58  Q
    |||||||||||||| ||||| |||||||| |||||||| | |||||||| |||||    
T  36910973 ccggccctagttttctagtgagagaaactccaacttctctataaactttttttct 36910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 37040575 - 37040616
Alignment:
Q  26 agaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||||  ||||||||||||||||||||||||| |||||||    
T  37040575 agaaactcaaacttctttctaaactttctttctctttcgttc 37040616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 45425361 - 45425410
Alignment:
Q  13 gttttttagtgggagaaacttcaacttctttctaaactttctttctcctt 62  Q
    ||||||||||  |||||||||||| |||||| |||||||||||| |||||    
T  45425361 gttttttagttagagaaacttcaatttctttttaaactttctttttcctt 45425410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 23800230 - 23800170
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttc-aacttctttctaaactttctttctccttc 63  Q
    |||||||||||||| ||||| |||||||||| || |||| |||||| ||| ||||||||||    
T  23800230 ccggccctagttttctagtgagagaaacttcaaatttctctctaaattttttttctccttc 23800170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 8013780 - 8013666
Alignment:
Q  7 gccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaaca 105  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |    || |||||| |||||||| ||||||||||||| ||||| ||     
T  8013780 gccctagttttttagtgagagaaacttcaacttctctctaaactttctttcttc----tttgttcatcgaggaggggtggttttagatcattttttgacc 8013685  T
Q  106 tagaatcacccctctacat 124  Q
    |||||||||||||||||||    
T  8013684 tagaatcacccctctacat 8013666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 13797249 - 13797132
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||| ||||||||| ||||| ||||||||||||||||| | |||| ||||||||    |||||||||||| ||||| |||||||||||| ||| ||||||    
T  13797249 ccggtcctagttttctagtgagagaaacttcaacttctctttaaattttctttc----tcgttcgttcatcgaggatggatggttttaggtcatttttta 13797154  T
Q  103 acatagaatcacccctctacat 124  Q
    || |||||||||||||||||||    
T  13797153 acctagaatcacccctctacat 13797132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 9450454 - 9450338
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaa 103  Q
    |||||||| |||| ||||| |||||||| |||||||||| |||||||||||||||||||    |||||| |||||||||||||||||| ||| ||||| |    
T  9450454 cggccctaattttctagtgagagaaactccaacttctttttaaactttctttctccttc----gttcatcgaggagggatggttttaggtcattttttga 9450359  T
Q  104 catagaatcacccctctacat 124  Q
    | ||||||||||| |||||||    
T  9450358 cctagaatcacccatctacat 9450338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 30757132 - 30757020
Alignment:
Q  9 cctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacata 107  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||    || ||||||||| |||||||| ||||||||| | | ||||| || ||    
T  30757132 cctagttttttagtgggagaaacttcaacttctctctaaattttctttc----tctttcgttcatcgaggaggggtggttttaggtaattttttgaccta 30757037  T
Q  108 gaatcacccctctacat 124  Q
    |||||||||||||||||    
T  30757036 gaatcacccctctacat 30757020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 12141615 - 12141509
Alignment:
Q  15 tttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatagaatca 113  Q
    ||||||| | |||||||| |||||||| |||||||||||||||||||||    |||||| || ||||| ||||||||| ||| ||||| |||||||||||    
T  12141615 tttttagagagagaaactccaacttctctctaaactttctttctccttc----gttcatcgaagaggggtggttttaggtcattttttgacatagaatca 12141520  T
Q  114 cccctctacat 124  Q
    |||||||||||    
T  12141519 cccctctacat 12141509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 37837769 - 37837659
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacataga 109  Q
    ||||||| || || |||||||| |||||||| |||||||||| ||||||||||    ||||||||||||||| ||||||||| ||| ||||| || ||||    
T  37837769 tagttttctaatgagagaaactccaacttctctctaaactttatttctccttc----gttcattgaggaggggtggttttaggtcattttttgacctaga 37837674  T
Q  110 atcacccctctacat 124  Q
    |||||||||||||||    
T  37837673 atcacccctctacat 37837659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 34899913 - 34899859
Alignment:
Q  13 gttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  34899913 gttttttagtgggagaaactccaacttctctctaaactttctttctccttcgttc 34899859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 19296655 - 19296768
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacat 106  Q
    ||||||||||||||||||||||||| |||||||  |||||  ||| ||| |||    ||||||||| |||||||| ||||||||| ||| ||||| || |    
T  19296655 ccctagttttttagtgggagaaactccaacttccctctaatttttttttgtcc----ttcgttcatcgaggaggggtggttttaggtcattttttgacct 19296750  T
Q  107 agaatcacccctctacat 124  Q
    ||||||||||||||||||    
T  19296751 agaatcacccctctacat 19296768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 42978389 - 42978498
Alignment:
Q  12 agttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatagaa 110  Q
    |||||| ||||| ||||||||  ||||||| ||||||||||||||||||    ||||||||| |||||||| ||||||||| ||| ||||| || |||||    
T  42978389 agttttctagtgagagaaactctaacttctctctaaactttctttctcc----ttcgttcatcgaggaggggtggttttaggtcattttttgacctagaa 42978484  T
Q  111 tcacccctctacat 124  Q
    ||||| ||||||||    
T  42978485 tcaccactctacat 42978498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 47590095 - 47590203
Alignment:
Q  12 agttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatagaat 111  Q
    |||||||||||| |||||| | |||||||| |||||| ||||||||    || ||||||||| |||||||| || |||||| |||||||| |  ||||||    
T  47590095 agttttttagtgagagaaattccaacttctctctaaattttctttc----tcattcgttcatagaggaggggtgattttaggtcatttttgaactagaat 47590190  T
Q  112 cacccctctacat 124  Q
    |||||||||||||    
T  47590191 cacccctctacat 47590203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 19405065 - 19404955
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacataga 109  Q
    ||||||||||||| |||||||| |||||||| ||||||  ||||||||||    ||  ||||||||| |||| ||||||||| ||| ||||| || ||||    
T  19405065 tagttttttagtgagagaaactccaacttctctctaaatcttctttctcc----ttaattcattgagaaggggtggttttaggtcattttttgacctaga 19404970  T
Q  110 atcacccctctacat 124  Q
    |||||||||||||||    
T  19404969 atcacccctctacat 19404955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 45350502 - 45350447
Alignment:
Q  12 agttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  45350502 agttttctagtgagagaaacttcaacttctctctaaactttttttctccttcgttc 45350447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 39171908 - 39171793
Alignment:
Q  6 ggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaac 104  Q
    |||||||||||| ||||| || ||||| |||| | | |||||||||||||||| |    ||||||||| |||||||| ||||| ||| ||| ||||| ||    
T  39171908 ggccctagttttctagtgagataaactccaacgtatctctaaactttctttcttc----ttcgttcatcgaggaggggtggttgtaggtcattttttgac 39171813  T
Q  105 atagaatcacccctctacat 124  Q
     |||||||||||||||||||    
T  39171812 ctagaatcacccctctacat 39171793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 48061206 - 48061312
Alignment:
Q  15 tttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatagaatca 113  Q
    ||||||| | |||||||| |||||||| |||||||||||||| |||    ||||||||| |||||| | ||||||||| ||| ||||| || ||||||||    
T  48061206 tttttagagagagaaactccaacttctctctaaactttctttatcc----ttcgttcatcgaggagaggtggttttaggtcattttttgacttagaatca 48061301  T
Q  114 cccctctacat 124  Q
    |||| ||||||    
T  48061302 ccccactacat 48061312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 38798565 - 38798677
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatt-ttta 102  Q
    |||||||||||||| |||||  ||||||| |||||||| ||| ||||||||||||| ||||||| |        ||||||||||||||| ||||| |||     
T  38798565 ccggccctagttttctagtg--agaaactccaacttctgtctgaactttctttctcattcgttcat-------cgagggatggttttaggtcattctttg 38798655  T
Q  103 acatagaatcacccctctacat 124  Q
    |||||||||||||| |||||||    
T  38798656 acatagaatcacccatctacat 38798677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 40992958 - 40993018
Alignment:
Q  7 gccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    ||||||||||| |||||||||||||| |||||||| ||||||||||  |||| ||||||||    
T  40992958 gccctagttttctagtgggagaaactccaacttctctctaaactttagttcttcttcgttc 40993018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 39329111 - 39329048
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    ||||||||| |||| ||||| ||||||||  ||||| |||||||||||||||||||||| ||||    
T  39329111 ccggccctaattttctagtgagagaaactcaaacttttttctaaactttctttctcctttgttc 39329048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 3224728 - 3224619
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatagaa 110  Q
    ||||||||||||| |||||| | |||||| |||||||| |||||||||| |||  || |||   || || || ||||||||| ||||||||| |||||||    
T  3224728 tagttttttagtgagagaaattccaacttttttctaaattttctttctctttcactc-ttc---gaagatgggtggttttaggtcatttttatcatagaa 3224633  T
Q  111 tcacccctctacat 124  Q
    |||| |||| ||||    
T  3224632 tcactcctcaacat 3224619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 4529853 - 4529911
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    ||||||||||||| ||||| ||||||||||| ||||| |||||   |||||||||||||    
T  4529853 cggccctagttttctagtgagagaaacttcaccttctctctaagtcttctttctccttc 4529911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 48317108 - 48317013
Alignment:
Q  26 agaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta-acatagaatcacccctctacat 124  Q
    |||||||  ||||||| |||||| || |||||||||||||||    ||  ||||||| ||||||||| ||||||||  || |||||||||||||||||||    
T  48317108 agaaactctaacttctctctaaatttgctttctccttcgttc----atcaaggaggggtggttttaggtcatttttggacctagaatcacccctctacat 48317013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 5348896 - 5348843
Alignment:
Q  9 cctagttttttagtgggagaaacttcaacttctttctaaactttctttctcctt 62  Q
    |||||||||||||||  |||||||||| ||||||| |||  |||||||||||||    
T  5348896 cctagttttttagtgaaagaaacttcatcttctttttaagttttctttctcctt 5348843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 25287494 - 25287434
Alignment:
Q  9 cctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgt 69  Q
    |||| |||||||||| ||||||||  ||||||| | |||| |||||||||||||| |||||    
T  25287494 cctaattttttagtgagagaaactataacttctctataaattttctttctccttcattcgt 25287434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 38880839 - 38880791
Alignment:
Q  65 ttcgttcattgaggagggatggttttagatcatttttaacatagaatca 113  Q
    |||||||||||||||||||  ||||||| |||||||| ||| |||||||    
T  38880839 ttcgttcattgaggagggacagttttaggtcatttttgacacagaatca 38880791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 72182 - 72089
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    |||||| |||||||| ||||||||| ||||||||    
T  72182 ccggccctagttttctagtgggagaaacttcaacttctctctaaactttctttctccttc----gttcatcgaggaggggtggttttaggtcattttt 72089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 17693922 - 17693813
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatagaa 110  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||||||||||    ||||||||||||||| | ||||||| |||||||| || |||||    
T  17693922 tagttttttagtgagagaaactccaacttctctctaaactttctttctccttc----gttcattgaggaggggttgttttaggtcatttttgacctagaa 17693827  T
Q  111 tcacccctctacat 124  Q
    ||| ||||||||||    
T  17693826 tcatccctctacat 17693813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 31013886 - 31013770
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaa 103  Q
    ||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||    |||||| |||||||| ||||||||| ||| ||||| |    
T  31013886 cggccctagttttctagtgagagaaactccaacttctctctaaactttctttctccttc----gttcatcgaggaggggtggttttaggtcattttttga 31013791  T
Q  104 catagaatcacccctctacat 124  Q
    | |||||||||||||||||||    
T  31013790 cctagaatcacccctctacat 31013770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 10377471 - 10377563
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||    ||||||||| |||||||| ||||||||| ||||||||    
T  10377471 cggccctagttttctagtgggagaaactccaacttctctctaaactttctttctcc----ttcgttcatcgaggaggggtggttttaggtcattttt 10377563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 29937909 - 29938004
Alignment:
Q  25 gagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatagaatcacccctctacat 124  Q
    |||||||| ||| |||| | |||||||||||||| |||||    ||||||||||| || |||||||||||||||||| || |||||||||||||||||||    
T  29937909 gagaaactccaatttctctttaaactttctttctacttcg----ttcattgaggatgggtggttttagatcatttttgacctagaatcacccctctacat 29938004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 25191376 - 25191265
Alignment:
Q  10 ctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatag 108  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||||||||    || |||||| |||||| | || |||||| ||| ||||| || |||    
T  25191376 ctagttttttagtgagagaaactccaacttctctctaaactttctttctcc----tttgttcatcgaggagaggtgattttaggtcattttttgacctag 25191281  T
Q  109 aatcacccctctacat 124  Q
    |||||||| |||||||    
T  25191280 aatcacccatctacat 25191265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 45446122 - 45446064
Alignment:
Q  9 cctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    ||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||    
T  45446122 cctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttc 45446064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 3673241 - 3673335
Alignment:
Q  26 agaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaacatagaatcacccctctacat 124  Q
    |||||||||||||||| ||||||||||||||||||    ||  ||||| || ||||| ||||||||| |||||||| || |||||||| ||||||||||    
T  3673241 agaaacttcaacttctctctaaactttctttctcc----tttattcatcgaagagggttggttttaggtcatttttgacctagaatcatccctctacat 3673335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 7883544 - 7883493
Alignment:
Q  16 ttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  7883544 ttttagtgagagaaacttcaacttctttctaaattttctttctcattcgttc 7883493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 27110780 - 27110721
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    ||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||||||||    
T  27110780 ccggcgctagttttctagtgagagaaactccaacttctctctaaactttctttctccttc 27110721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 7677539 - 7677479
Alignment:
Q  65 ttcgttcattgaggagggatggttttagatca-tttttaacatagaatcacccctctacat 124  Q
    |||||||||||||||||| ||||||||| ||| ||||| || |||||||||||||||||||    
T  7677539 ttcgttcattgaggaggggtggttttaggtcattttttgacctagaatcacccctctacat 7677479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 20560052 - 20559943
Alignment:
Q  12 agttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt-aacatagaa 110  Q
    |||||| ||| | |||||||  |||||||| |||||||||| ||||| ||||||||    || || ||||| ||||||||||||||||||  || |||||    
T  20560052 agttttctagggagagaaacaccaacttctctctaaactttttttcttcttcgttc----atcgatgaggggtggttttagatcatttttggacctagaa 20559957  T
Q  111 tcacccctctacat 124  Q
    ||||||||||||||    
T  20559956 tcacccctctacat 20559943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 20571614 - 20571505
Alignment:
Q  12 agttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt-aacatagaa 110  Q
    |||||| ||| | |||||||  |||||||| |||||||||| ||||| ||||||||    || || ||||| ||||||||||||||||||  || |||||    
T  20571614 agttttctagggagagaaacaccaacttctctctaaactttttttcttcttcgttc----atcgatgaggggtggttttagatcatttttggacctagaa 20571519  T
Q  111 tcacccctctacat 124  Q
    ||||||||||||||    
T  20571518 tcacccctctacat 20571505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 8412660 - 8412572
Alignment:
Q  9 cctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    ||||||||| ||||| ||||||||  ||||||| |||||||||||||||    || ||||||||| ||| |||| ||||||||| ||||||||    
T  8412660 cctagttttctagtgagagaaactctaacttctctctaaactttctttc----tcattcgttcatcgagtaggggtggttttaggtcattttt 8412572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 1237010 - 1236919
Alignment:
Q  4 ccggccctagtttttt-agtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatt 98  Q
    |||||||||||||||| |||| ||||||||||||||||| |||||  |||| |||    || |||| ||||||||||||| ||||||||| |||||    
T  1237010 ccggccctagtttttttagtgagagaaacttcaacttctctctaagttttccttc----tctttcgctcattgaggaggggtggttttaggtcatt 1236919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 23230438 - 23230480
Alignment:
Q  25 gagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  23230438 gagaaactccaacttctctctaaactttctttctccttcgttc 23230480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 18537674 - 18537629
Alignment:
Q  12 agttttttagtgggagaaacttcaacttctttctaaactttctttc 57  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||    
T  18537674 agttttttagtgagagaaacttcaacttttctctaaactttctttc 18537629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 41060531 - 41060475
Alignment:
Q  14 ttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgtt 70  Q
    |||||||||| ||||||||||| | ||| |||||| |||||||||||||| ||||||    
T  41060531 ttttttagtgagagaaacttcatcatctctctaaaatttctttctccttctttcgtt 41060475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 33214923 - 33214884
Alignment:
Q  28 aaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  33214923 aaacttcaatttctctctaaactttctttctccttcgttc 33214884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 36948742 - 36948695
Alignment:
Q  15 tttttagtgggagaaacttcaacttctttctaaactttctttctcctt 62  Q
    ||||||||| || |||||||||||||| | ||||||||||||||||||    
T  36948742 tttttagtgagacaaacttcaacttctctttaaactttctttctcctt 36948695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 1608284 - 1608242
Alignment:
Q  14 ttttttagtgggagaaacttcaacttctttctaaactttcttt 56  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||    
T  1608284 ttttttagtgagagaaactttaacttctctctaaactttcttt 1608242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 29617768 - 29617718
Alignment:
Q  9 cctagttttttagtgggagaaacttcaacttctttctaaactttctttctc 59  Q
    ||||||||||||||| |||||| |||||||||| |||||| ||| ||||||    
T  29617768 cctagttttttagtgagagaaatttcaacttctctctaaattttgtttctc 29617718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 20553504 - 20553451
Alignment:
Q  65 ttcgttcattgaggagggatggttttagatcattttt-aacatagaatcacccc 117  Q
    ||||||||| |||||||| ||||||||||||||||||  || ||||||||||||    
T  20553504 ttcgttcatcgaggaggggtggttttagatcatttttggacctagaatcacccc 20553451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 40211621 - 40211560
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgtt 66  Q
    ||||| ||||||| ||||| |||||||| ||| |||| | |||| |||||||||||||||||    
T  40211621 cggccttagttttctagtgagagaaactccaatttctctttaaaatttctttctccttcgtt 40211560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 7337981 - 7337864
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||||||||||||| |||||  |||||||||||||||| |||||||||||||||||||||    |||||| |||||||||||||| ||  ||| |||||     
T  7337981 ccggccctagttttctagtgaaagaaacttcaacttctctctaaactttctttctccttc----gttcatcgaggagggatggttctatgtcattttttg 7337886  T
Q  103 acatagaatcacccctctacat 124  Q
    |  |||||||||||||||||||    
T  7337885 atctagaatcacccctctacat 7337864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 27456320 - 27456397
Alignment:
Q  10 ctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggtttta 91  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||     |||||||||||||||||    
T  27456320 ctagttttttagtgagaaaaacttcaacttctttctaaactttctttctccttcattcgtc----gaggagggatggtttta 27456397  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 35484696 - 35484603
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    |||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||    |||||| |||||||| ||||| ||| ||||||||    
T  35484696 ccggccctagttttctagtgagagaaactccaacttctctctaaactttctttctccttc----gttcatcgaggaggggtggttgtaggtcattttt 35484603  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 51916970 - 51916907
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||||||||||||||||| |||||||||||| || | |||||||||||||||||||||||||    
T  51916970 ccggccctagttttttagtgagagaaacttcaatttttctctaaactttctttctccttcgttc 51916907  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 35462356 - 35462238
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta- 102  Q
    |||||| ||||||||||||||||||||||  ||||| | ||||||||||||||||||||||||     |||||| | || ||||||||| ||||||||      
T  35462356 ccggccttagttttttagtgggagaaactctaacttatctctaaactttctttctccttcgttt----attgagaatgggtggttttaggtcattttttt 35462261  T
Q  103 -acatagaatcacccctctacat 124  Q
     ||||||||||| ||||||||||    
T  35462260 tacatagaatcatccctctacat 35462238  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 5983621 - 5983703
Alignment:
Q  15 tttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    ||||||| | ||||||||| ||||||| |||||||||| |||||||    ||||||||| |||||||||||||||||||||||||||    
T  5983621 tttttagagagagaaactttaacttctctctaaactttatttctcc----ttcgttcatcgaggagggatggttttagatcattttt 5983703  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 34878589 - 34878496
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttt 101  Q
    |||||||||||||| ||||| |||||||| |||||||| | |||||||||||||    || ||||||||| |||||||| ||||||||| ||||||||    
T  34878589 ccggccctagttttctagtgagagaaactccaacttctctttaaactttctttc----tctttcgttcatcgaggaggggtggttttaggtcattttt 34878496  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 10776777 - 10776661
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaa 103  Q
    |||| |||||||||||| | |||||||| ||| |||| ||||||||||||||||||    ||| ||||| ||||| || ||||||||||||| ||||| |    
T  10776777 cggcactagttttttagggagagaaactccaatttctctctaaactttctttctcc----ttcattcatcgaggaagggtggttttagatcattttttga 10776682  T
Q  104 catagaatcacccctctacat 124  Q
    | ||||||||||| |||||||    
T  10776681 cctagaatcacccatctacat 10776661  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 21947934 - 21947820
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaac 104  Q
    ||||| ||||||| ||||| |||||||||||| || | |||||||||||||||||     ||||||||| ||||| || ||||||||| | |||||||||    
T  21947934 cggccttagttttctagtgagagaaacttcaatttttctctaaactttctttctc-----ttcgttcatcgaggatgggtggttttaggttatttttaac 21947840  T
Q  105 atagaatcacccctctacat 124  Q
     |||||||| || |||||||    
T  21947839 ctagaatcatccatctacat 21947820  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 29738933 - 29738837
Alignment:
Q  25 gagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatc-atttttaacatagaatcacccctctaca 123  Q
    |||||||| |||| ||| |||||||||||||||||||||    |||||| |||||||| ||||||||| || |||||| || ||||||||||||||||||    
T  29738933 gagaaactccaacatctctctaaactttctttctccttc----gttcatcgaggaggggtggttttaggtcaattttttacctagaatcacccctctaca 29738838  T

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Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 45415340 - 45415450
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta-acataga 109  Q
    ||||||| ||||| ||||||||||||||||| | |||||||||||||| |||||||     || |||||||| ||||||||| ||||||||  |  ||||    
T  45415340 tagttttctagtgagagaaacttcaacttctctttaaactttctttcttcttcgttt----atcgaggaggggtggttttaggtcattttttgatctaga 45415435  T
Q  110 atcacccctctacat 124  Q
    |||||||||||||||    
T  45415436 atcacccctctacat 45415450  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 41176976 - 41177052
Alignment:
Q  24 ggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcatttttaac 104  Q
    ||||||||| |||||||| ||||||||||||||||||    ||||||||| |||||||| ||||||||| |||||| ||||    
T  41176976 ggagaaactccaacttctctctaaactttctttctcc----ttcgttcatcgaggaggggtggttttaggtcatttataac 41177052  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 31983955 - 31984017
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    ||||||||| ||||||||| |||||||| |||||||| |||||||||||||||| ||| ||||    
T  31983955 cggccctagatttttagtgagagaaactccaacttctctctaaactttctttcttctttgttc 31984017  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 14872420 - 14872472
Alignment:
Q  11 tagttttttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||||| ||||    
T  14872420 tagttttttagtgagagaaactccaacttctttctgaactttctttcttcttc 14872472  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 1742055 - 1742118
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    |||||| ||||||| ||||| ||||||||  ||||||||||||||||| ||||||| |||||||    
T  1742055 ccggccttagttttctagtgagagaaactcaaacttctttctaaacttcctttctctttcgttc 1742118  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 11462745 - 11462653
Alignment:
Q  25 gagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacatagaatcacccctct 120  Q
    |||||||||||| |||| |||||||||||||||||||||    ||||||||| ||||| || |||||| | | ||||| || |||||||||||||||    
T  11462745 gagaaacttcaatttctctctaaactttctttctccttc----gttcattgacgaggggtgattttaggttattttttgacctagaatcacccctct 11462653  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 26535175 - 26535237
Alignment:
Q  5 cggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttc 67  Q
    ||||| ||||||| ||||| ||||||||  ||||||| |||||||||||| ||||||||||||    
T  26535175 cggccttagttttctagtgagagaaactctaacttctctctaaactttctctctccttcgttc 26535237  T

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Target: scaffold0445 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 1119 - 1230
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-tttttaacat 106  Q
    |||||||||||||||| | ||||||||||||||| |||||| |||||||||||    ||||||||| |||||| | ||||||||| ||| ||||| || |    
T  1119 ccctagttttttagtgagtgaaacttcaacttctctctaaattttctttctcc----ttcgttcatcgaggagaggtggttttaggtcattttttgacct 1214  T
Q  107 agaatcacccctctac 122  Q
    ||||||||||||||||    
T  1215 agaatcacccctctac 1230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 33063 - 32949
Alignment:
Q  7 gccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta-aca 105  Q
    ||||||||||| ||||| ||||||||  ||||||| |||||||||||||||| |||||||     || |||||||  ||||||||| ||||||||  |||    
T  33063 gccctagttttctagtgagagaaactctaacttctctctaaactttctttcttcttcgttt----atcgaggaggagtggttttaggtcattttttgaca 32968  T
Q  106 tagaatcacccctctacat 124  Q
    |||||||||||||||||||    
T  32967 tagaatcacccctctacat 32949  T

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Target: scaffold0634 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 8288 - 8338
Alignment:
Q  7 gccctagttttttagtgggagaaacttcaacttctttctaaactttctttc 57  Q
    ||||||||||||||||| |||| |||||||||||| | |||||||||||||    
T  8288 gccctagttttttagtgagagacacttcaacttctctataaactttctttc 8338  T

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Target: scaffold0884 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 2279 - 2173
Alignment:
Q  15 tttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatcattttta-acatagaatca 113  Q
    ||||||| | |||||||| |||||||| |||||||||| ||||||||||||||    || |||||||  ||||||||  ||||||||  |  ||||||||    
T  2279 tttttagagagagaaactccaacttctctctaaactttttttctccttcgttc----atcgaggaggagtggttttaagtcattttttgatctagaatca 2184  T
Q  114 cccctctacat 124  Q
    |||||||||||    
T  2183 cccctctacat 2173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 25647 - 25530
Alignment:
Q  4 ccggccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttcgttcgttcattgaggagggatggttttagatca-ttttta 102  Q
    |||||||||||||| ||||| ||||||||||||||| | ||||||     |||||||    ||||||||| |||||||| ||||||||  ||| |||||     
T  25647 ccggccctagttttctagtgagagaaacttcaacttttctctaaaaaaattttctcc----ttcgttcatcgaggaggggtggttttatgtcattttttg 25552  T
Q  103 acatagaatcacccctctacat 124  Q
    || || ||||||||||||||||    
T  25551 acctataatcacccctctacat 25530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 15152 - 15097
Alignment:
Q  8 ccctagttttttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    |||||| ||| ||||| |||||||| ||| |||| |||||||||||||||||||||    
T  15152 ccctagatttctagtgagagaaactccaatttctctctaaactttctttctccttc 15097  T

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Target: scaffold0262 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 2121 - 2076
Alignment:
Q  18 ttagtgggagaaacttcaacttctttctaaactttctttctccttc 63  Q
    |||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  2121 ttagtgagagaaactccaacttctttcaaaactttctttcttcttc 2076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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