View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1531_1D_low_47 (Length: 229)
Name: NF1531_1D_low_47
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3176118 - 3176344
Alignment:
| Q |
1 |
tatgaatcggcgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgag |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3176118 |
tatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttggag |
3176217 |
T |
|
| Q |
101 |
aaagagaaaaactaatactaaagttttggccattttttggtttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagagagt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3176218 |
aaagagaaaaaccaatactaaagttttggccattttttggtttaagagaatgtaaccttgaaagagagggagttgagtgatgttggtgtgttgagagagt |
3176317 |
T |
|
| Q |
201 |
gtgatagttgatctatttataagagct |
227 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
3176318 |
gtgagagttgatctatttataagagct |
3176344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 24541327 - 24541537
Alignment:
| Q |
12 |
gacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaa |
111 |
Q |
| |
|
||||||||||||| |||| ||||| ||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||||||| |||||||||||||| |
|
|
| T |
24541327 |
gacttagttggggaatgatgtggagttgctggtttgtgatgaagagtttctagcttttcagcaaatgctatgaaagaggttatttggagaaagagaaaaa |
24541426 |
T |
|
| Q |
112 |
ctaatactaaagttttggccattttttggt-ttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagagagtgtgatagttg |
210 |
Q |
| |
|
|||| | |||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
24541427 |
acaataagagagttttcgccatttttttgtgttaagagaaggtaaccttgaaagagagggagatgagtgatgttgatgtgttgagagagtgtgagagttg |
24541526 |
T |
|
| Q |
211 |
atctatttata |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
24541527 |
atctatttata |
24541537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 41525234 - 41525460
Alignment:
| Q |
1 |
tatgaatcggcgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgag |
100 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||| || |||||||| |||||||||| ||| |
|
|
| T |
41525234 |
tatgaaccggtgacttagttgggg-atgaagtggagttgctggtttgtgatgaagagtttctagctcttcagcaaatgctatgaaggaggttatttggag |
41525332 |
T |
|
| Q |
101 |
aaagagaaaaact-aatactaaagttttggccattttttggtttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagagag |
199 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| |||||||||| | ||| |||| ||||||||||| ||| ||||||||| |||||||||| |
|
|
| T |
41525333 |
taagagaaaaaaacaatactagagttttggccattttttgttttaagagaatgcaactttgaaagagagggagagaagtaatgttggtgggttgagagag |
41525432 |
T |
|
| Q |
200 |
tgtgatagttgatctatttataagagct |
227 |
Q |
| |
|
||||| |||||||||||||||| ||||| |
|
|
| T |
41525433 |
tgtgagagttgatctatttataggagct |
41525460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 20963952 - 20963741
Alignment:
| Q |
1 |
tatgaatcggcgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgag |
100 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||| |
|
|
| T |
20963952 |
tatgaaccggtgacttagttgggggatgaagtggagttgctggtttgttatgaaaagtttctagctcttcagtaaatgctatgaaagaggttatttggag |
20963853 |
T |
|
| Q |
101 |
aaagagaaaaactaatactaaagttttggccatt--ttttggtttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagaga |
198 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||| ||||| ||||||||| | |||||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
20963852 |
aaagagaaaaaacaataccagagttttggccattttttttgtgttaagagaaag-aaccttgaaagagagggagaggattgatgttggtgtgttgagaga |
20963754 |
T |
|
| Q |
199 |
gtgtgatagttga |
211 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
20963753 |
gtgtgagagttga |
20963741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 14675158 - 14675257
Alignment:
| Q |
12 |
gacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaa |
111 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||||||||||| |||||| |||||||| || || | | |||||||||||||| ||| |||||||||| |
|
|
| T |
14675158 |
gactttgttgggggatgaagtggtgttgttggtttgtgatgaagagtttcaagctcttccgcaaacacaacgaaagaggttatttggagtaagagaaaaa |
14675257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University