View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1531_1D_low_48 (Length: 223)

Name: NF1531_1D_low_48
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1531_1D_low_48
NF1531_1D_low_48
[»] chr5 (11 HSPs)
chr5 (5-165)||(38806757-38806917)
chr5 (101-165)||(38868438-38868503)
chr5 (15-55)||(39424641-39424681)
chr5 (22-71)||(14818306-14818354)
chr5 (15-88)||(38749549-38749622)
chr5 (15-71)||(28296328-28296384)
chr5 (16-71)||(32444767-32444822)
chr5 (23-56)||(2039867-2039900)
chr5 (15-56)||(9449469-9449510)
chr5 (22-71)||(19737485-19737534)
chr5 (15-83)||(9878023-9878091)
[»] chr4 (8 HSPs)
chr4 (9-83)||(18513232-18513306)
chr4 (11-69)||(14465299-14465357)
chr4 (18-71)||(25390889-25390942)
chr4 (15-71)||(56049877-56049932)
chr4 (4-67)||(19262931-19262994)
chr4 (22-66)||(5654599-5654643)
chr4 (24-68)||(11110212-11110256)
chr4 (23-71)||(33950144-33950192)
[»] chr7 (8 HSPs)
chr7 (15-70)||(38134410-38134465)
chr7 (15-71)||(2525847-2525903)
chr7 (15-67)||(4909151-4909203)
chr7 (9-63)||(7546154-7546208)
chr7 (22-71)||(20427638-20427687)
chr7 (22-71)||(36314630-36314679)
chr7 (15-71)||(23128664-23128720)
chr7 (22-66)||(44172898-44172942)
[»] chr1 (8 HSPs)
chr1 (15-71)||(19637768-19637824)
chr1 (9-71)||(11412771-11412833)
chr1 (16-68)||(2445871-2445923)
chr1 (2-61)||(45660782-45660841)
chr1 (22-71)||(373054-373103)
chr1 (20-56)||(3921672-3921708)
chr1 (10-66)||(17425101-17425157)
chr1 (23-67)||(30847727-30847771)
[»] chr2 (9 HSPs)
chr2 (16-67)||(18570973-18571024)
chr2 (14-56)||(40681981-40682023)
chr2 (15-68)||(4229414-4229467)
chr2 (15-68)||(10535765-10535818)
chr2 (15-48)||(12464875-12464908)
chr2 (22-71)||(31026702-31026751)
chr2 (16-72)||(42205837-42205893)
chr2 (19-71)||(44605142-44605194)
chr2 (27-71)||(45000849-45000893)
[»] chr3 (8 HSPs)
chr3 (22-71)||(20691326-20691375)
chr3 (22-71)||(40150574-40150623)
chr3 (15-67)||(37077358-37077410)
chr3 (25-71)||(8039216-8039262)
chr3 (22-71)||(27513665-27513715)
chr3 (22-71)||(40697861-40697910)
chr3 (15-56)||(41319328-41319369)
chr3 (15-71)||(21478683-21478739)
[»] chr8 (9 HSPs)
chr8 (15-71)||(12985392-12985448)
chr8 (16-64)||(37225753-37225801)
chr8 (9-61)||(40063945-40063997)
chr8 (22-72)||(3508059-3508109)
chr8 (16-57)||(14227223-14227264)
chr8 (15-56)||(34201064-34201105)
chr8 (23-63)||(29198490-29198530)
chr8 (23-71)||(31236580-31236628)
chr8 (15-71)||(31548296-31548352)
[»] chr6 (7 HSPs)
chr6 (15-67)||(9024183-9024235)
chr6 (8-78)||(19343514-19343584)
chr6 (25-71)||(29670903-29670949)
chr6 (15-56)||(4859131-4859172)
chr6 (23-71)||(9617442-9617490)
chr6 (26-70)||(10157995-10158039)
chr6 (15-71)||(32313404-32313460)
[»] scaffold0011 (1 HSPs)
scaffold0011 (22-71)||(240024-240073)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 38806917 - 38806757
Alignment:
Q  5 acatgacacggacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtgctctgtcggacaagatacatacttcgtacaaac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38806917 acatgacacggacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtgctgtgtcggacaagatacatacttcgtacaaac 38806818  T
Q  105 tgatcatggtaagtcctcttcgattgtacaccgagacaaatccagaaacctcaatttgttt 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38806817 tgatcatggtaagtcctcttcgattgtacaccgagacaaatccagaaacctcaatttgttt 38806757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 38868438 - 38868503
Alignment:
Q  101 aaactgatcatggta-agtcctcttcgattgtacaccgagacaaatccagaaacctcaatttgttt 165  Q
    ||||||||||||||| |||||||||| | |||||||| |||||||||||| |||||| ||||||||    
T  38868438 aaactgatcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgttt 38868503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 39424641 - 39424681
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgta 55  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  39424641 gacaccaataataatttgagaaaatgacatgattcaatgta 39424681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 14818354 - 14818306
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  14818354 ataataatttgagaa-atgacataattcaatgtaaacatatgtgtcggtg 14818306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 38749622 - 38749549
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtgctctgtcggacaagata 88  Q
    |||||| |||||||||||| || ||||||| |||||||||||  |||||||| |||| | ||||||||| ||||    
T  38749622 gacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtcggacacgata 38749549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 28296328 - 28296384
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||| ||||||||||||||| ||||||| ||||||||||  ||||||||| ||||    
T  28296328 gacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttggtg 28296384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 32444767 - 32444822
Alignment:
Q  16 acaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||| ||| |||||||||| ||||||| ||||||||||| || |||||||||||    
T  32444767 acaccattaacaatttgagaagatgacataattcaatgtaatcaaatgtgtcggtg 32444822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 2039900 - 2039867
Alignment:
Q  23 taataatttgagaatatgacatgattcaatgtaa 56  Q
    |||||||||||||| |||||||||||||||||||    
T  2039900 taataatttgagaaaatgacatgattcaatgtaa 2039867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 9449469 - 9449510
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaa 56  Q
    |||||||||||||||||||||| || |||| |||||||||||    
T  9449469 gacaccaataataatttgagaaaatcacataattcaatgtaa 9449510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 19737534 - 19737485
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    ||||||||||||||| || |||| |||||||| || ||||||||||||||    
T  19737534 ataataatttgagaaaattacataattcaatgcaatcatatgtgtcggtg 19737485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 9878091 - 9878023
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtgctctgtcggaca 83  Q
    |||||||||||||||||||||||||||  | ||| ||||||| ||  |||||| ||||  |||||||||    
T  9878091 gacaccaataataatttgagaatatgaattaattgaatgtaatcacttgtgtcagtgccatgtcggaca 9878023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 18513306 - 18513232
Alignment:
Q  9 gacacggacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtgctctgtcggaca 83  Q
    ||||| |||||| ||||||||||||||| ||||||| ||||||||||| |||||||||| ||| | |||||||||    
T  18513306 gacacagacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcggaca 18513232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 14465357 - 14465299
Alignment:
Q  11 cacggacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcgg 69  Q
    |||||||||| ||||||||||||||| ||||||| ||||||| ||| ||||||||||||    
T  14465357 cacggacaccgataataatttgagaaaatgacataattcaatttaatcatatgtgtcgg 14465299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 25390942 - 25390889
Alignment:
Q  18 accaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||||||||| |||| ||||||| ||||||| ||| ||||||||||||||    
T  25390942 accaataataattttagaaaatgacataattcaatataaccatatgtgtcggtg 25390889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 56049877 - 56049932
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||| ||||||||||||||| |||||||  |||||||||| ||||||||||||||    
T  56049877 gacaccgataataatttgagaa-atgacatagttcaatgtaatcatatgtgtcggtg 56049932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 19262994 - 19262931
Alignment:
Q  4 gacatgacacggacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtc 67  Q
    |||| ||||| ||||||| |||||||||||||| ||||||| ||| ||||||| || |||||||    
T  19262994 gacacgacactgacaccagtaataatttgagaagatgacataattgaatgtaatcacatgtgtc 19262931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 5654643 - 5654599
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgt 66  Q
    ||||||||||||||| ||||||| ||||||||||| |||| ||||    
T  5654643 ataataatttgagaaaatgacataattcaatgtaatcatacgtgt 5654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 11110212 - 11110256
Alignment:
Q  24 aataatttgagaatatgacatgattcaatgtaagcatatgtgtcg 68  Q
    ||||||||||||| ||||||| |||| |||||| |||||||||||    
T  11110212 aataatttgagaaaatgacataattcgatgtaatcatatgtgtcg 11110256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 33950144 - 33950192
Alignment:
Q  23 taataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||||||||| || |||| ||| ||||||| ||||||||||||||    
T  33950144 taataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtg 33950192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 38134465 - 38134410
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggt 70  Q
    |||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  38134465 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcggt 38134410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 2525903 - 2525847
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||| ||||||||||||| | ||||||| ||||||| ||| ||||||||||||||    
T  2525903 gacaccgataataatttgagcaaatgacataattcaatataatcatatgtgtcggtg 2525847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 4909151 - 4909203
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtc 67  Q
    |||||||||||||||||||||| || |||| ||||| ||||| ||||||||||    
T  4909151 gacaccaataataatttgagaaaattacataattcattgtaatcatatgtgtc 4909203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 7546154 - 7546208
Alignment:
Q  9 gacacggacaccaataataatttgagaatatgacatgattcaatgtaagcatatg 63  Q
    ||||||||||||| ||||||||||| || ||||||| ||||||||| | ||||||    
T  7546154 gacacggacaccagtaataatttgacaaaatgacataattcaatgtgatcatatg 7546208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 20427687 - 20427638
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    ||||||||||||||| |||||||  || ||||||| ||||||||||||||    
T  20427687 ataataatttgagaagatgacatatttaaatgtaatcatatgtgtcggtg 20427638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 36314679 - 36314630
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    ||||||||||||||| |||||||  |||||||||| ||||||||| ||||    
T  36314679 ataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtg 36314630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 23128720 - 23128664
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||||||||||||||||| |  | || ||||| ||||| ||||||||||||||    
T  23128720 gacaccaataataatttgagaaaaccatataattcagtgtaatcatatgtgtcggtg 23128664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 44172942 - 44172898
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgt 66  Q
    ||||||||||||||| ||||||| ||||||||||| || ||||||    
T  44172942 ataataatttgagaaaatgacataattcaatgtaatcacatgtgt 44172898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 19637768 - 19637824
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||||||    
T  19637768 gacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtg 19637824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 11412833 - 11412771
Alignment:
Q  9 gacacggacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||||||| |||||||| |||||| ||||||| ||||||||| | |||| |||||||||    
T  11412833 gacacggacaccgataataatatgagaaaatgacataattcaatgtgatcataggtgtcggtg 11412771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 2445871 - 2445923
Alignment:
Q  16 acaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcg 68  Q
    |||||||| |||||||||||| ||||||| ||||||| ||| |||||||||||    
T  2445871 acaccaatgataatttgagaaaatgacataattcaatttaatcatatgtgtcg 2445923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 45660841 - 45660782
Alignment:
Q  2 cagacatgacacggacaccaataataatttgagaatatgacatgattcaatgtaagcata 61  Q
    |||||| ||||  |||||||||||||||||||||||||| ||| ||| ||||||| ||||    
T  45660841 cagacacgacatcgacaccaataataatttgagaatatgtcataattgaatgtaatcata 45660782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 373054 - 373103
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    ||||||||||||||| ||||||||||| | | ||| ||||||||||||||    
T  373054 ataataatttgagaaaatgacatgatttagtttaatcatatgtgtcggtg 373103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 3921672 - 3921708
Alignment:
Q  20 caataataatttgagaatatgacatgattcaatgtaa 56  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  3921672 caataataatttgagaaaatgacataattcaatgtaa 3921708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 17425157 - 17425101
Alignment:
Q  10 acacggacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgt 66  Q
    ||||||||||| |||||||||||| || || |||| |||||||||||  ||||||||    
T  17425157 acacggacaccgataataatttgataaaatcacataattcaatgtaattatatgtgt 17425101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 30847771 - 30847727
Alignment:
Q  23 taataatttgagaatatgacatgattcaatgtaagcatatgtgtc 67  Q
    ||||||||||| || ||||||| ||||||||||| ||||||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcatatgtgtc 30847727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 18570973 - 18571024
Alignment:
Q  16 acaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtc 67  Q
    ||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 40681981 - 40682023
Alignment:
Q  14 ggacaccaataataatttgagaatatgacatgattcaatgtaa 56  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||    
T  40681981 ggacaccgataataatttgagaaaatgacataattcaatgtaa 40682023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 4229467 - 4229414
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcg 68  Q
    ||||||||||||||||| |||  ||||||| ||||| ||||| |||||||||||    
T  4229467 gacaccaataataatttaagagaatgacataattcagtgtaatcatatgtgtcg 4229414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 10535818 - 10535765
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcg 68  Q
    |||||| ||||||||||||||| ||||||| ||||| ||||| |||| ||||||    
T  10535818 gacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgtcg 10535765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 12464908 - 12464875
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgatt 48  Q
    |||||||||||||||||||||| |||||||||||    
T  12464908 gacaccaataataatttgagaaaatgacatgatt 12464875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 31026702 - 31026751
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||||| |||| ||||||| ||||||||||| ||||| ||||||||    
T  31026702 ataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtg 31026751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 42205893 - 42205837
Alignment:
Q  16 acaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtgc 72  Q
    ||||||||||||||||||||| ||||| | ||| ||  ||| |||||||||||||||    
T  42205893 acaccaataataatttgagaaaatgacttaattgaaaataatcatatgtgtcggtgc 42205837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 44605194 - 44605142
Alignment:
Q  19 ccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||||||||||||| || |||| |||||||||||  | |||||||||||    
T  44605194 ccaataataatttgagaaaataacataattcaatgtaattacatgtgtcggtg 44605142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 45000893 - 45000849
Alignment:
Q  27 aatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||||| ||||||  ||||||||||| ||||||||||||||    
T  45000893 aatttgagaaaatgacacaattcaatgtaatcatatgtgtcggtg 45000849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 20691326 - 20691375
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    ||||||||||||||| ||||||| ||||| ||||| ||||||||||||||    
T  20691326 ataataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtg 20691375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 40150623 - 40150574
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    ||||||||||||||| |||| || ||||||||||| ||||||||||||||    
T  40150623 ataataatttgagaaaatgatataattcaatgtaatcatatgtgtcggtg 40150574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 37077358 - 37077410
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtc 67  Q
    |||||| |||||||||||||||||| |||| |||||||| || ||||||||||    
T  37077358 gacaccgataataatttgagaatataacataattcaatggaatcatatgtgtc 37077410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 8039216 - 8039262
Alignment:
Q  25 ataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||||||| ||| ||||||||||||||| |||| |||||||||    
T  8039216 ataatttgagaaaatggcatgattcaatgtaatcataggtgtcggtg 8039262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 27513715 - 27513665
Alignment:
Q  22 ataataatttgagaata-tgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    ||||||||||||||| | |||||| ||||||||||| ||||||||||||||    
T  27513715 ataataatttgagaaaaatgacattattcaatgtaatcatatgtgtcggtg 27513665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 40697910 - 40697861
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||| |||||| ||||||| ||||||| ||| ||||||||||||||    
T  40697910 ataataatatgagaaaatgacataattcaatctaaccatatgtgtcggtg 40697861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 41319369 - 41319328
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaa 56  Q
    ||||||||||||||||||| || ||||||| |||||||||||    
T  41319369 gacaccaataataatttgaaaaaatgacataattcaatgtaa 41319328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 21478683 - 21478739
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    ||||||||||||||||| | || ||||||| | ||||||||| ||||||||| ||||    
T  21478683 gacaccaataataatttcacaagatgacataaatcaatgtaatcatatgtgttggtg 21478739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 12985392 - 12985448
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||| ||||||||||||||| || |||| ||||||||||| ||||| ||||||||    
T  12985392 gacacctataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtg 12985448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 37225801 - 37225753
Alignment:
Q  16 acaccaataataatttgagaatatgacatgattcaatgtaagcatatgt 64  Q
    ||||||||||||||||||||| || |||| ||||||||||| |||||||    
T  37225801 acaccaataataatttgagaaaataacataattcaatgtaatcatatgt 37225753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 40063945 - 40063997
Alignment:
Q  9 gacacggacaccaataataatttgagaatatgacatgattcaatgtaagcata 61  Q
    ||||| |||||||||||||||||||||| ||||||| ||||| ||||| ||||    
T  40063945 gacaccgacaccaataataatttgagaaaatgacataattcattgtaatcata 40063997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 3508059 - 3508109
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtgc 72  Q
    ||||||||||||||| || |||| ||||||||||| ||||||||| |||||    
T  3508059 ataataatttgagaaaataacataattcaatgtaatcatatgtgttggtgc 3508109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 14227223 - 14227264
Alignment:
Q  16 acaccaataataatttgagaatatgacatgattcaatgtaag 57  Q
    ||||||||||||||||||||| || |||| ||||||||||||    
T  14227223 acaccaataataatttgagaaaataacataattcaatgtaag 14227264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 34201105 - 34201064
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaa 56  Q
    ||||| |||||||||||||||| ||||||| |||||||||||    
T  34201105 gacactaataataatttgagaaaatgacataattcaatgtaa 34201064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 29198530 - 29198490
Alignment:
Q  23 taataatttgagaatatgacatgattcaatgtaagcatatg 63  Q
    |||||||||||||| ||||||| ||||||||||| ||||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaatcatatg 29198490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 31236628 - 31236580
Alignment:
Q  23 taataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||||||||| || |||| |||||||||||  |||||||||||||    
T  31236628 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtg 31236580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 31548352 - 31548296
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||| ||||| |||||| || ||||||| ||||||||||| || |||||||||||    
T  31548352 gacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtcggtg 31548296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 9024235 - 9024183
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtc 67  Q
    ||||| ||| |||||||||||| ||||||| ||||||||||| ||||||||||    
T  9024235 gacacaaatgataatttgagaaaatgacataattcaatgtaatcatatgtgtc 9024183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 19343584 - 19343514
Alignment:
Q  8 tgacacggacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtgctctgtc 78  Q
    |||||| |||||| ||| |||||||| ||  |||||||||||||||||| || |||||| |||||| ||||    
T  19343584 tgacactgacaccgatattaatttgaaaaagtgacatgattcaatgtaatcacatgtgttggtgctgtgtc 19343514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 29670903 - 29670949
Alignment:
Q  25 ataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||||||| ||||||||||||||||||| || |||||| ||||    
T  29670903 ataatttgagaaaatgacatgattcaatgtaaccacatgtgttggtg 29670949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 4859172 - 4859131
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaa 56  Q
    |||||||||||||||||||||| ||||||| || ||||||||    
T  4859172 gacaccaataataatttgagaaaatgacataatccaatgtaa 4859131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 9617442 - 9617490
Alignment:
Q  23 taataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||||||||| || |||| |||||||||||  |||||||||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtg 9617490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  26 taatttgagaatatgacatgattcaatgtaagcatatgtgtcggt 70  Q
    ||||||||||| ||||||| ||||||||||| || ||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 32313404 - 32313460
Alignment:
Q  15 gacaccaataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    |||||||||||||| ||||||| || ||||||||||||| ||  |||||||| ||||    
T  32313404 gacaccaataataagttgagaaaataacatgattcaatgcaattatatgtgtgggtg 32313460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 240073 - 240024
Alignment:
Q  22 ataataatttgagaatatgacatgattcaatgtaagcatatgtgtcggtg 71  Q
    ||||||||||||||| || | || ||||||||||| ||||||||||||||    
T  240073 ataataatttgagaaaataatataattcaatgtaatcatatgtgtcggtg 240024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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