View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531_1D_low_49 (Length: 221)
Name: NF1531_1D_low_49
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_49 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 183548 - 183355
Alignment:
| Q |
14 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttaccggttcaagaacacaa |
113 |
Q |
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| T |
183548 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
183449 |
T |
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| Q |
114 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatg |
207 |
Q |
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| T |
183448 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatg |
183355 |
T |
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Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 493968 - 494161
Alignment:
| Q |
14 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttaccggttcaagaacacaa |
113 |
Q |
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| T |
493968 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
494067 |
T |
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| Q |
114 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatg |
207 |
Q |
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| T |
494068 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatg |
494161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 18191629 - 18191823
Alignment:
| Q |
14 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttaccggttcaagaacacaa |
113 |
Q |
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| T |
18191629 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
18191728 |
T |
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| Q |
114 |
ggtgccccctgttttttcagggtaagaa-ggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatg |
207 |
Q |
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| T |
18191729 |
ggtgccccctgttttttcagggtaagaagggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatg |
18191823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 34658967 - 34659160
Alignment:
| Q |
14 |
gatggacatcaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttaccggttcaagaacacaa |
113 |
Q |
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| T |
34658967 |
gatggacaacaggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaa |
34659066 |
T |
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| Q |
114 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatg |
207 |
Q |
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| T |
34659067 |
ggtgccccctgttttttcagggtaagaaggggtagagaaaatgcctccagccaagattcgagtacgaggcgctccggcgctgaagtaattgatg |
34659160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 8174940 - 8174997
Alignment:
| Q |
98 |
cggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtagagaaaatg |
156 |
Q |
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| T |
8174940 |
cggttcaagcacacaaggtgccct-tgtttttgtagggtaagaagggatagagaaaatg |
8174997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 14404532 - 14404690
Alignment:
| Q |
49 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttaccggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
148 |
Q |
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| T |
14404532 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
14404631 |
T |
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| Q |
149 |
agaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatg |
207 |
Q |
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| T |
14404632 |
agaaaatggctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatg |
14404690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 45610235 - 45610202
Alignment:
| Q |
23 |
caggtgaatattcctgtactacctcttgttggtc |
56 |
Q |
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| T |
45610235 |
caggtgaatattcctgtactacctcttgttggtc |
45610202 |
T |
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