View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1531_1D_low_50 (Length: 219)
Name: NF1531_1D_low_50
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_50 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 14133538 - 14133408
Alignment:
| Q |
7 |
ctaccagaactaacgccgcattcttttgagtcggcactgcgttcttgtcctcgatagggttcatacttttaccaccagtaatggaggactagaaagtggt |
106 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14133538 |
ctaccagagctaacaccgcattcttttgagtcggcactgcgttcttgtcctccatagggttcatacttctaccaccagtaatggaggactagaaagtggt |
14133439 |
T |
|
| Q |
107 |
gtgagctcaaaagaatgtaaggggttagcta |
137 |
Q |
| |
|
||||||||||||||||| || |||||||||| |
|
|
| T |
14133438 |
gtgagctcaaaagaatgcaaagggttagcta |
14133408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 14133357 - 14133314
Alignment:
| Q |
168 |
ttatttaatacgatccaaaccgcaaacgaaaatctcacgaacac |
211 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
14133357 |
ttatttaatacgacctaaaccgcaaacgaaaatctcacgaacac |
14133314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University